Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30501
(785 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52640.2 68416.m05800 nicastrin-related contains weak similar... 35 0.070
At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 35 0.070
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 35 0.070
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 33 0.21
At5g27400.1 68418.m03271 expressed protein hypothetical proteins... 32 0.38
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 31 0.87
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic... 30 2.0
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 29 2.6
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 3.5
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 3.5
At2g29250.1 68415.m03554 lectin protein kinase, putative similar... 29 4.6
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 29 4.6
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 29 4.6
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 29 4.6
At1g16260.1 68414.m01947 protein kinase family protein contains ... 29 4.6
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 29 4.6
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 28 6.1
At4g31100.1 68417.m04414 wall-associated kinase, putative 28 8.1
At3g04160.1 68416.m00440 expressed protein ; expression supporte... 28 8.1
At2g20370.1 68415.m02378 exostosin family protein contains Pfam ... 28 8.1
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 28 8.1
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 28 8.1
At1g16160.1 68414.m01936 protein kinase family protein contains ... 28 8.1
>At3g52640.2 68416.m05800 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 705
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 143 HLELIHDLSDGQSVSVLQPMGVQAIDGFPTVPILQRQ-DARCSNP 12
HL L +++ +SV LQ + A+DGFP V +L + CSNP
Sbjct: 24 HLSLADEITSIESVPDLQKLMYVAVDGFPCVRLLNLSGEIGCSNP 68
>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 676
Score = 34.7 bits (76), Expect = 0.070
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 143 HLELIHDLSDGQSVSVLQPMGVQAIDGFPTVPILQRQ-DARCSNP 12
HL L +++ +SV LQ + A+DGFP V +L + CSNP
Sbjct: 24 HLSLADEITSIESVPDLQKLMYVAVDGFPCVRLLNLSGEIGCSNP 68
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 34.7 bits (76), Expect = 0.070
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Frame = +2
Query: 476 C*MHRRSRIRLYGECIPCRPAEGRIIDSRGRCVCDSERGFIIQGDKCVAGGCRTDD---- 643
C H+ R G C PC+ + C C + +I GD V G + +D
Sbjct: 390 CGRHQCERTCHVGPCDPCQ------VLVNATCFCKKKVETVICGDMNVKGELKAEDGVYS 443
Query: 644 ---NCADNSRCIRGQCVDACKAEPCGINATCDAVGHR-SHCTCMPATLE 778
NC C C + C PCG CD + R C C LE
Sbjct: 444 CSFNCGKPLGCGNHFCSEVCHPGPCG---DCDLLPSRVKTCYCGNTRLE 489
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 33.1 bits (72), Expect = 0.21
Identities = 28/95 (29%), Positives = 38/95 (40%)
Frame = +2
Query: 476 C*MHRRSRIRLYGECIPCRPAEGRIIDSRGRCVCDSERGFIIQGDKCVAGGCRTDDNCAD 655
C +H I GEC PCR E + +C C G + + C R + +C +
Sbjct: 250 CNIHNCREICHDGECPPCR--ERAVY----KCSC----GKVKEEKDCCERVFRCEASCEN 299
Query: 656 NSRCIRGQCVDACKAEPCGINATCDAVGHRSHCTC 760
C + C C A CG+ C G RS C C
Sbjct: 300 MLNCGKHVCERGCHAGECGL---CPYQGKRS-CPC 330
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +3
Query: 234 HQYRERMRKTEGPQCISDIDCPSGTGCLNYRCVNPCLVSNPCSENAQCKIVDTM 395
H R R E P C S+I C C N++C +PC PC A C I+ T+
Sbjct: 413 HACRRRCCDGECPPC-SEI-CGKKLRCRNHKCQSPC-HQGPC---APCPIMVTI 460
>At5g27400.1 68418.m03271 expressed protein hypothetical proteins -
different species
Length = 369
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 174 LANICIAGRITFGIDT*FIRWTICVSSAANGSASY 70
LA C G IT F W ICV +AANG+ SY
Sbjct: 30 LARGCTGGSITENAQRFF--WEICVEAAANGNGSY 62
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 31.1 bits (67), Expect = 0.87
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Frame = +3
Query: 237 QYRERMRKTEGPQ--CISDIDCPSGTGCLNYRC-VNPCLVSNP-CSENAQCKIVDTMPV- 401
QYR ++ +T + C + + CLN N CL+ N C ++ + +
Sbjct: 379 QYRGKLERTAVLKAICSGFKERTEPSICLNSDIETNECLIENGGCWQDKRSNVTACKDTF 438
Query: 402 KTMVCEC--LPG--YKGNALQECKPYQTVAKCIEGQG 500
+ VCEC + G YKG+ CKPY A+C G
Sbjct: 439 RGRVCECPVVDGVQYKGDGYTSCKPYGP-ARCSMNNG 474
>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
pathogen infection (PMID:10380805)
Length = 735
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 560 RGRCVCDSERGFIIQGDKCVAGGCRTDDNCADNSRCIRGQCVD--ACKAEPCGINATCDA 733
R +C GF G+ ++ GC+ + C +S R C D C+ + G C +
Sbjct: 259 RNGYICRCNEGF--DGNPYLSAGCQDVNECTTSSTIHRHNCSDPKTCRNKVGGFYCKCQS 316
Query: 734 VGHRSHCTCM 763
G+R T M
Sbjct: 317 -GYRLDTTTM 325
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +1
Query: 34 CRCKIGTVGNPSIACTPIGCRTDTDCPSDKSCINSKCDTPCNADICQEPAQCKVHLHQAH 213
CRC G GNP ++ GC+ +C + + + C +P C+ + +
Sbjct: 264 CRCNEGFDGNPYLSA---GCQDVNECTTSST---------IHRHNCSDPKTCRNKVGGFY 311
Query: 214 CACPPGF 234
C C G+
Sbjct: 312 CKCQSGY 318
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +1
Query: 106 DCPSDKSCINSKCDTPCNADICQEPAQCKVHLHQAHCA--CPPGFTNTGKE*EKLKD 270
DC +DK+C N + D C+ C + H A CP G +N +++D
Sbjct: 152 DCTNDKACKNCRTSGHIARD-CRNDPVCNICSISGHVARHCPKGDSNYSDRGSRVRD 207
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 647 CADNSRCIRGQCVDACKAEPCGINATCDAVGHRSHCTC 760
C+ N C+ VD + EPC T + GH +C
Sbjct: 284 CSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSC 321
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 647 CADNSRCIRGQCVDACKAEPCGINATCDAVGHRSHCTC 760
C+ N C+ VD + EPC T + GH +C
Sbjct: 284 CSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSC 321
>At2g29250.1 68415.m03554 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 623
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 494 TFDAFSNSLIWLAFL*CISFVSRQTFTNHGF 402
T+ + + S+I+L + C+S + F NHGF
Sbjct: 4 TYKSIAVSIIFLLYFSCVSSQQQTKFLNHGF 34
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.7 bits (61), Expect = 4.6
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +3
Query: 414 CECLPGYKGNALQECK 461
CEC PG+KG+ +++C+
Sbjct: 501 CECPPGFKGDGVKKCE 516
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.7 bits (61), Expect = 4.6
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +3
Query: 414 CECLPGYKGNALQECK 461
CEC PG+KG+ +++C+
Sbjct: 501 CECPPGFKGDGVKKCE 516
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +3
Query: 333 NPCLVSNP-CSENAQCKIVDTMPV-KTMVCEC--LPG--YKGNALQECKPYQTVAKCIEG 494
N CL +N C E+ + + + VCEC + G YKG+ C+PY A+C
Sbjct: 415 NECLEANGGCWEDKKSNVTACKDTFRGRVCECPVVNGVQYKGDGYTSCEPYGP-ARCSIN 473
Query: 495 QG 500
QG
Sbjct: 474 QG 475
>At1g16260.1 68414.m01947 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 575 CDSERGFIIQGDKCVAGGCRTDDNCADN--SRCIRGQCVDACKAEPC 709
C G+ +G+ + GGC+ D C D ++C + +CV+ + C
Sbjct: 266 CSCHNGY--EGNPYIPGGCQDIDECRDPHLNKCGKRKCVNVLGSYRC 310
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 339 CLVSNPCSENAQCKIVDTMPVKTMVCECLPGYK 437
C + N C N C D+ + C CLPGY+
Sbjct: 287 CDIYNHCGFNGYC---DSTSTEKFECSCLPGYE 316
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 28.3 bits (60), Expect = 6.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 414 CECLPGYKGNALQECK 461
C+C PG+ G+ L+ECK
Sbjct: 500 CKCPPGFIGDGLKECK 515
>At4g31100.1 68417.m04414 wall-associated kinase, putative
Length = 786
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +1
Query: 28 ASCRCKIGTVGNP--SIACTPIG-CRTDTD-CPSDKSCINSKCDTPCNAD 165
A+C C +G GNP S C I C+ + C +C+N + C D
Sbjct: 316 ANCECNLGYKGNPYDSDGCRDIDECKENPKYCKETDTCVNFEGGYRCVGD 365
>At3g04160.1 68416.m00440 expressed protein ; expression supported
by MPSS
Length = 712
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 180 WFLANICIAGRI--TFGIDT*FIRWTICVSSAANGSASYRWVSNCTDL 43
W L N G I TF D F+ + +C+ SA + +R S+ TD+
Sbjct: 266 WILVNSTRYGVIIDTFMRDHIFLLFRLCLKSAVKEACGFRMESDATDV 313
>At2g20370.1 68415.m02378 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 619
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 653 DNSRCIRGQCVDACKAEPCGINATCDAVGHRSH 751
DN + IRGQ +D C+ G CD + H
Sbjct: 376 DNPKSIRGQIIDQCRNSNVGKLLECDFGESKCH 408
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 414 CECLPGYKGNALQECK 461
CEC PG+KG+ ++C+
Sbjct: 501 CECPPGFKGDGTKKCE 516
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 414 CECLPGYKGNALQECK 461
CEC PG+KG+ ++C+
Sbjct: 501 CECPPGFKGDGTKKCE 516
>At1g16160.1 68414.m01936 protein kinase family protein contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 711
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 31 SCRCKIGTVGNPSIACTPIGCRTDTDCPSDKSCINSKC 144
+C C +G GNP + GC + DC C C
Sbjct: 279 NCYCSLGFTGNPYLRG---GCIDNDDCKGPNICEEGTC 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,957,864
Number of Sequences: 28952
Number of extensions: 439092
Number of successful extensions: 1118
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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