Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30499
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 78 2e-15
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 45 1e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 41 2e-04
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.30
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.2
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 28 1.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.4
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.5
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 77.8 bits (183), Expect = 2e-15
Identities = 31/74 (41%), Positives = 40/74 (54%)
Frame = +2
Query: 257 GHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 436
GH AR+C + CY CN TGH A E + E +CY C GH+ R+CP
Sbjct: 26 GHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE 84
Query: 437 CYNCNKSGHISRNC 478
CY C + GHI+R+C
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 72.1 bits (169), Expect = 7e-14
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Frame = +2
Query: 257 GHFARDCKE--EADRCYRCNGTGHIAREFAQSPDE---PSCYNCNKTGHIARNCPEGGRE 421
GH A +C E + CY C GH+ R+ SP+ CY C + GHIAR+C G++
Sbjct: 45 GHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQ 104
Query: 422 S--------ATQTCYNCNKSGHISRNCPDGTKTCYVC 508
S + CY C GH +R+C G K CY C
Sbjct: 105 SGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSC 140
Score = 67.7 bits (158), Expect = 2e-12
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +2
Query: 293 RCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 472
RCY C GH ARE + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 473 NCPDGTK-----TCYVC 508
+CP CY C
Sbjct: 72 DCPSSPNPRQGAECYKC 88
Score = 58.8 bits (136), Expect = 7e-10
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 356 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVC 508
P CYNC + GH AR C +G CYNCN++GH + C P KTCY C
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCYAC 63
Score = 56.4 bits (130), Expect = 4e-09
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Frame = +2
Query: 257 GHFARDCKEEADR-------------CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIAR 397
GH ARDC+ + CY C GH AR+ CY+C K GH +
Sbjct: 92 GHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSF 148
Query: 398 NCPEGGRESATQTCYNCNKSGHISRNC 478
C + S Q CY CN+ GHI+ NC
Sbjct: 149 ECQQA---SDGQLCYKCNQPGHIAVNC 172
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKC 248
S P + CYKC R GH AR+C G S G +R C+ C
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYAC 121
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 15/55 (27%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNR 254
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGR 90
Score = 35.5 bits (78), Expect = 0.008
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQDT 263
CY C GH ARECT+G + + + +C + ++ T
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT 59
Score = 31.9 bits (69), Expect = 0.098
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 123 AMSSSVCYKCNRTGHFARECT 185
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNR 254
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQ 164
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 45.2 bits (102), Expect = 1e-05
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 257 GHFARDCKEEADRCYRCNGTG-HIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 433
GH ++DC C C HI+ + P C NC GHIA C E R+ +
Sbjct: 96 GHISKDCPHVL--CTTCGAIDDHIS---VRCPWTKKCMNCGLLGHIAARCSE-PRKRGPR 149
Query: 434 TCYNCNKSGHISRNCP 481
C C+ H S CP
Sbjct: 150 VCRTCHTDTHTSSTCP 165
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 HFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTG-HIARNCPEGGRESATQT 436
+F D E+ C+ C G GHI+++ C C HI+ CP T+
Sbjct: 78 YFGSD-PSESIVCHNCKGNGHISKDCPHV----LCTTCGAIDDHISVRCPW------TKK 126
Query: 437 CYNCNKSGHISRNCPD----GTKTCYVC 508
C NC GHI+ C + G + C C
Sbjct: 127 CMNCGLLGHIAARCSEPRKRGPRVCRTC 154
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 416 RESATQTCYNCNKSGHISRNCPD 484
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Frame = +2
Query: 257 GHFARDCKEEADR-----CYRCNGTGHIAREFAQSPDEP 358
GH DC E + C C GHIAR+ +P
Sbjct: 318 GHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = +2
Query: 257 GHFARDCKEEADR---CYRCNGTGHIAREFA-QSPDE-PSCYNCNKTGHIARNCPEG--G 415
GH +DC E D C+RC H + + P + C+ C++ GH++ C + G
Sbjct: 86 GHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKG 145
Query: 416 RESATQTCYNCNKSGHISRNCPDGTK 493
C C+ H++++C K
Sbjct: 146 LYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Frame = +2
Query: 329 REFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC----PDGTKT 496
R Q + C+ C + GHI ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 497 CYVC 508
C++C
Sbjct: 126 CFIC 129
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 293 RCYRCNGTGHIAREFAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 430
+C+ C+ GH++ + Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 398 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 508
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 413 GRESATQTCYNCNKSGHISRN--CP 481
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 341 QSPDEPSCYNCNKTGHIARN--CPEGGR 418
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Frame = +2
Query: 329 REFAQSPDEPSCYNCNKTGHIARNCPEGGRES----ATQTCYNCNKSGHISR 472
REF ++P C C H+ N P E Y CN GH R
Sbjct: 94 REFFVWVNQPPCEKCGGETHMTGNGPPNEEEKWNGVRNVELYQCNVCGHNQR 145
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 135 SVCYKCNRTGHFAREC 182
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 135 SVCYKCNRTGHFAREC 182
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +2
Query: 323 IAREFAQSPDEPS--CYNCNKTGHIARNCP 406
IA P P CY C + GH + CP
Sbjct: 170 IAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 8.5
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC 182
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSG 460
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,036
Number of Sequences: 5004
Number of extensions: 51742
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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