Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30499
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 71 8e-13
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 68 6e-12
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 63 2e-10
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 60 2e-09
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 55 4e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 50 1e-06
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 50 2e-06
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 48 6e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 48 6e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 48 6e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 47 1e-05
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 47 1e-05
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 47 1e-05
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 43 2e-04
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.001
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 39 0.004
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.007
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.037
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.086
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 34 0.11
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 33 0.15
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.15
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.20
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.26
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.35
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.60
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.60
At3g31950.1 68416.m04046 hypothetical protein 31 0.60
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.60
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.60
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.60
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.60
At5g47430.1 68418.m05844 expressed protein 30 1.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.4
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.4
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.4
At4g17410.1 68417.m02607 expressed protein 30 1.4
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.4
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.8
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 30 1.8
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.8
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.8
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.4
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.4
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.4
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.4
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.4
At5g61670.2 68418.m07738 expressed protein 29 3.2
At5g61670.1 68418.m07737 expressed protein 29 3.2
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.2
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 29 3.2
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 29 3.2
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 29 4.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 4.3
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 4.3
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 4.3
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 28 5.6
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.6
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.6
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.6
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 28 5.6
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 5.6
At2g31850.1 68415.m03889 expressed protein 28 5.6
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 28 7.4
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 28 7.4
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 7.4
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 28 7.4
At2g19400.1 68415.m02263 protein kinase, putative contains prote... 27 9.8
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 9.8
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 27 9.8
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 70.9 bits (166), Expect = 8e-13
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
Frame = +2
Query: 257 GHFARDCKEE------------ADRCYRCNGTGHIAREFAQSPDEPS--CYNCNKTGHIA 394
GHFARDC ++ + CY C G GHIAR+ A + +PS CY C +GH+A
Sbjct: 207 GHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLA 265
Query: 395 RNCPEGGRESA--TQTCYNCNKSGHISRNC 478
R+C + G CY C K GH +R C
Sbjct: 266 RDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 57.6 bits (133), Expect = 8e-09
Identities = 44/141 (31%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Frame = +2
Query: 188 GGRGVAGFRFQSAT*EVLQVQPPGHFARDC------------KEEADRCYRCNGTGHIAR 331
GG G G R GHFARDC K D CY C GH+AR
Sbjct: 118 GGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVAR 177
Query: 332 EFAQSP------------DEPSCYNCNKTGHIARNCPE----GGRES---ATQTCYNCNK 454
+ Q CY C GH AR+C + G S + TCY+C
Sbjct: 178 DCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGG 237
Query: 455 SGHISRNCP---DGTKTCYVC 508
GHI+R+C ++ CY C
Sbjct: 238 VGHIARDCATKRQPSRGCYQC 258
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Frame = +2
Query: 296 CYRCNGTGHIAREFA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 433
CY C GHI+++ +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 434 ---TCYNCNKSGHISRNC 478
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
CY C TGHFAR+CT G + + C+ C
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTC 169
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 257
CY+C +GH AR+C Q R SG C+KC ++
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKE 288
Score = 35.1 bits (77), Expect = 0.049
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECT 185
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
CY C GHFAR+CTQ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSC 235
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
S CY C GH +++C GG +R E C+ C
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNC 137
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKC 248
CY C GH AR+CTQ V + D + C+ C
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTC 203
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDG 487
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 132 SSVCYKCNRTGHFAREC 182
S CY C GH AR+C
Sbjct: 229 SGTCYSCGGVGHIARDC 245
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 68.1 bits (159), Expect = 6e-12
Identities = 33/75 (44%), Positives = 41/75 (54%)
Frame = +2
Query: 254 PGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 433
PGHFARDC C C GHIA A+ E C+NC + GH+A NC G
Sbjct: 63 PGHFARDCSN-VSVCNNCGLPGHIA---AECTAESRCWNCREPGHVASNCSNEG------ 112
Query: 434 TCYNCNKSGHISRNC 478
C++C KSGH +R+C
Sbjct: 113 ICHSCGKSGHRARDC 127
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +2
Query: 257 GHFARDCKEEADR------CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGR 418
GH ARDC R C C GH+A A ++ +C NC +GHIAR+C
Sbjct: 121 GHRARDCSNSDSRAGDLRLCNNCFKQGHLA---ADCTNDKACKNCRTSGHIARDCRN--- 174
Query: 419 ESATQTCYNCNKSGHISRNCPDG 487
C C+ SGH++R+CP G
Sbjct: 175 ---DPVCNICSISGHVARHCPKG 194
Score = 45.2 bits (102), Expect = 5e-05
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 28/103 (27%)
Frame = +2
Query: 257 GHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP---------- 406
GH A DC + C C +GHIAR+ ++P C C+ +GH+AR+CP
Sbjct: 147 GHLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRG 202
Query: 407 ----EGGRE--------------SATQTCYNCNKSGHISRNCP 481
+GG + SA C+NC GH + CP
Sbjct: 203 SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 508
C NC + GH AR+C S C NC GHI+ C ++ C+ C
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNC 98
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGV 197
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 245
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Frame = +2
Query: 257 GHFARDCKEEA--------DRCYRCNGTGHIAREFAQSPDEP------SCYNCNKTGHIA 394
GHFARDC++ CY C G GHIA+ +CY C TGH+A
Sbjct: 205 GHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLA 264
Query: 395 RNCPEGGRESA-----TQTCYNCNKSGHISRNC 478
R+C G S+ + C+ C K GH +R C
Sbjct: 265 RDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Frame = +2
Query: 290 DRCYRCNGTGHIAREFAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 439
D CY C G GH AR+ Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 440 YNCNKSGHISRNC 478
Y C +GH++R+C
Sbjct: 255 YECGGTGHLARDC 267
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 27/98 (27%)
Frame = +2
Query: 296 CYRCNGTGHIAREFAQSPDEPS---------CYNCNKTGHIARNCPEG----------GR 418
CY C GH AR+ QS S CY+C + GH+A++C G GR
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 419 ESATQTCYNCNKSGHISRNCPD--------GTKTCYVC 508
S CY C GH +R+C G TCY C
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTC 229
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 25/111 (22%)
Frame = +2
Query: 233 EVLQVQPPGHFARDCKEEADR-----CYRCNGTGHIAREF--------------AQSPDE 355
+ ++V PG + + KE + R C+ C GH+A++ +S E
Sbjct: 70 KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129
Query: 356 PSCYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGT 490
CY C GH AR+C + GG + CY+C + GH++++C G+
Sbjct: 130 GECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRQ 257
CY+C TGH AR+C + G S SG KCF C ++
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKE 290
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
CY C GHFAR+C Q G + G R C+ C
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSC 166
Score = 33.1 bits (72), Expect = 0.20
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C GHFAR+C Q G
Sbjct: 198 CYMCGGVGHFARDCRQNG 215
Score = 32.3 bits (70), Expect = 0.35
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECT 185
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSG 215
CY C GH A++C G +R G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGG 187
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 248
S CY C GH A+ CT + S G R C++C
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYEC 257
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKC 248
S C+ C GH A++C G G S G R+ +C+ C
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMC 135
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Frame = +2
Query: 260 HFARDCKEEADR-----CYRCNGTGHIAREFAQSPDEPS----CYNCNKTGHIARNCPEG 412
H A+ C E+++ C +C GH + + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 413 GRESATQ--TCYNCNKSGHISRNCPDGTKTCY 502
+ T+ +C+ C GHIS+NCP+ Y
Sbjct: 144 MEDGGTKFASCFICKGQGHISKNCPENKHGIY 175
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +2
Query: 308 NGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 487
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 488 T------KTCYVC 508
K CY C
Sbjct: 118 NNESSEKKLCYNC 130
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = +2
Query: 344 SPDEPSCYNCNKTGHIARNCPEG-------GRESATQTCYNCNKSGHISRNCPDGTK 493
S + CY C + GH AR CP GRES T CY CN SGH +R CP+ ++
Sbjct: 321 SREASECYRCGEEGHFARECPNSSSISTSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = +2
Query: 284 EADRCYRCNGTGHIAREFAQSPD---------EPSCYNCNKTGHIARNCPEGGRES 424
EA CYRC GH ARE S + CY CN +GH AR CP + S
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 257 GHFARDCKEEADR---CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRE-S 424
GH + +C R C+ C H A++ ++ D CY C KTGH A++CP+ + S
Sbjct: 175 GHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGS 231
Query: 425 ATQTCYNCNKSGH 463
C C GH
Sbjct: 232 KGAVCLRCGDFGH 244
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 296 CYRCNGTGHIAREF-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 472
CY C GH + + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 473 NCPDGTK 493
+CPD K
Sbjct: 222 DCPDKYK 228
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCN 251
+S CY+C GHFAREC +S G + C++CN
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCN 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 508
SCY+C + GH + NCP + + C+ C H ++ C G CY+C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYIC 213
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNRQDT 263
S ++CY+CN +GHFAREC VS RD + K K N++++
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENS 399
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 17/83 (20%)
Frame = +2
Query: 293 RCYRCNGTGHIAR-EFAQSPD-EPSCYNCNKTGHIARNC-----PEGGRESAT------- 430
+CY C GH+ E S SCY C + GH C +SAT
Sbjct: 262 QCYICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNS 321
Query: 431 ---QTCYNCNKSGHISRNCPDGT 490
CY C + GH +R CP+ +
Sbjct: 322 REASECYRCGEEGHFARECPNSS 344
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 11/41 (26%)
Frame = +2
Query: 257 GHFARDC-----------KEEADRCYRCNGTGHIAREFAQS 346
GHFAR+C +E CYRCNG+GH ARE S
Sbjct: 334 GHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +2
Query: 293 RCYRCNGTGHIAR-EFAQSPD-EPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHI 466
+CY CN GH+ E + SCY C + GH C +S + +C+ C + GH
Sbjct: 54 KCYVCNSLGHLCCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHF 113
Query: 467 SRNCPDGTKTCY 502
C + C+
Sbjct: 114 EHQCHNSFSVCF 125
Score = 47.6 bits (108), Expect = 9e-06
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Frame = +2
Query: 236 VLQVQPPGHFARDCKEEADRCYRCNGTGH----IAREFA-QSPDEPSCYNCNKTGHIARN 400
+ +V P R +EA+ C RC G GH E++ + CY CN GH+
Sbjct: 8 ISRVCDPLIMPRHNDDEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC-- 65
Query: 401 CPEGGR-ESATQTCYNCNKSGHISRNC-----PDGTKTCYVC 508
C E G +S T +CY C + GH C + +C++C
Sbjct: 66 CIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFIC 107
Score = 35.1 bits (77), Expect = 0.049
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Frame = +2
Query: 191 GRGVAGFRFQSAT*EVLQVQPPGHFARDCKEEADRCYR--CNGTGHIAREFAQSPDEPS- 361
G + RFQ T E + GHF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 362 -----CYNCNKTGHIARNCPEGGR 418
CY C GHIAR+CP +
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQ 215
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +2
Query: 341 QSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNCPDGTK 493
Q PD S C+ + G I+ N +T CY C GHI+R+CP+ ++
Sbjct: 159 QCPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQ 215
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 81 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 200
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)
Frame = +2
Query: 221 SAT*EVLQVQPPGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARN 400
SA + + PGH++RDC ++ + + S CY C K GH +R+
Sbjct: 265 SAAGDCFKCGKPGHWSRDCTAQS------GNPKYEPGQMKSSSSSGECYKCGKQGHWSRD 318
Query: 401 CP--------EGGRESATQT---CYNCNKSGHISRNCPDGTKT 496
C + G+ +T + CY C K+GH SR+C +T
Sbjct: 319 CTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQT 361
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 20/81 (24%)
Frame = +2
Query: 296 CYRCNGTGHIARE-FAQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 418
CY+C GH AR+ QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 419 -ESATQTCYNCNKSGHISRNC 478
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 123 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNR 254
A + + CYKC + GH+AR+CT V D+G + CFKC +
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGK 275
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 96 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRQ 257
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +Q
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +3
Query: 96 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 233
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +3
Query: 129 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNR 254
SS CYKC + GH++R+CT Q SG + C+KC +
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGK 347
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 221 SAT*EVLQVQPPGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARN 400
S++ E + GH++RDC ++ +G A+ + + D CY C K GH +R+
Sbjct: 301 SSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQ---AKSTSSTGD---CYKCGKAGHWSRD 354
Query: 401 CPEGGRESAT 430
C + + T
Sbjct: 355 CTSPAQTTNT 364
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 45.2 bits (102), Expect = 5e-05
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEE---ADRCYRCNGTGHI 325
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 13 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 69
Query: 326 AREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
AR+ + CY C + GHI RNC ++ Y+
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 85
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+ C GH+AR+CT G
Sbjct: 60 CFNCGVDGHWARDCTAG 76
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 45.2 bits (102), Expect = 5e-05
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEE---ADRCYRCNGTGHI 325
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 24 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 80
Query: 326 AREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
AR+ + CY C + GHI RNC ++ Y+
Sbjct: 81 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 96
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+ C GH+AR+CT G
Sbjct: 71 CFNCGVDGHWARDCTAG 87
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 45.2 bits (102), Expect = 5e-05
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEE---ADRCYRCNGTGHI 325
P A AR + GR G R T E + P G D + A RC+ C GH
Sbjct: 54 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 110
Query: 326 AREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 445
AR+ + CY C + GHI RNC ++ Y+
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R+ ++ C+NC GH +R+C D CY C
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRC 126
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+ C GH+AR+CT G
Sbjct: 101 CFNCGVDGHWARDCTAG 117
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPD 484
D +CY C K GH AR+C + +A TCY C++ GH S CP+
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPN 77
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = +2
Query: 296 CYRCNGTGHIAR--EFAQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 457
CY+C GH AR P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 458 GH 463
H
Sbjct: 96 DH 97
Score = 31.9 bits (69), Expect = 0.46
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 141 CYKCNRTGHFAREC 182
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPG---HFARDCKEEADRCYRCNGTGHI 325
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 54 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 110
Query: 326 AREFAQSPDEPSCYNCNKTGHIARNC 403
AR+ + CY C + GHI RNC
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 257 GHFARDCK--EEADRCYRCNGTGHIAREFAQSP 349
GH+ARDC + ++CYRC GHI R SP
Sbjct: 108 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R++ ++ C+NC GH +R+C D CY C
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRC 126
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQG 191
S C+ C GH+AR+CT G
Sbjct: 98 SGRCFNCGVDGHWARDCTAG 117
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +2
Query: 347 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 44.8 bits (101), Expect = 6e-05
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 155 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPPG---HFARDCKEEADRCYRCNGTGHI 325
P A AR + GR G R T E + P G + +R + RC+ C GH
Sbjct: 13 PRDADDARYYLDGRDFDGSRI---TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHW 69
Query: 326 AREFAQSPDEPSCYNCNKTGHIARNC 403
AR+ + CY C + GHI RNC
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 257 GHFARDCK--EEADRCYRCNGTGHIAREFAQSP 349
GH+ARDC + ++CYRC GHI R SP
Sbjct: 67 GHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVC 508
T +R P G R++ ++ C+NC GH +R+C D CY C
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRC 85
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 132 SSVCYKCNRTGHFARECTQG 191
S C+ C GH+AR+CT G
Sbjct: 57 SGRCFNCGVDGHWARDCTAG 76
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2
Query: 296 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
C++C GH+ARE +Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 476 CPDG 487
C G
Sbjct: 195 CTSG 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +2
Query: 188 GGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEEADRCYRCNGTGHIAREFAQSPDEP--S 361
GGRG G + PGH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 362 CYNCNKTGHIARNCPEGG 415
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.021
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 383 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 487
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 266 ARDCKEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 442
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 443 NCNKSGHISRNCP 481
C GH R CP
Sbjct: 294 GCGGKGHNRRTCP 306
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 27/101 (26%)
Frame = +2
Query: 260 HFARDCKEEADRCYRCNGTGHIAREFAQSPDEPS------------CYNCNKTGHIARNC 403
H+ + ADR +RC G G P S C C + GH +R C
Sbjct: 277 HYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRTC 336
Query: 404 --PEG------GRESA-------TQTCYNCNKSGHISRNCP 481
P G G S T C C K GH R CP
Sbjct: 337 RKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Frame = +2
Query: 188 GGRGVAGFRFQSAT*EVLQVQPPGHFARDCKEEADRC------------YRCNGTGHIAR 331
GGRG G R S + + PGH ARDC E Y G G+
Sbjct: 119 GGRGGGG-RGGS---DCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 332 EFAQSPDEPSCYNCNKTGHIARNCPEGGR 418
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 35.9 bits (79), Expect = 0.028
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 135 SVCYKCNRTGHFARECTQGG 194
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Frame = +2
Query: 296 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 454
CY+C GH+AR+ ++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 455 SGHISRNCPDG 487
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 31.1 bits (67), Expect = 0.80
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNCPDG 487
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 230
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEG 412
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 410 GGRESATQT--CYNCNKSGHISRNCPDG 487
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 230
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEG 412
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 410 GGRESATQT--CYNCNKSGHISRNCPDG 487
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 230
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNC 478
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGG 415
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 293 RCYRCNGTGHIARE 334
+CY C TGH ARE
Sbjct: 100 KCYECGETGHFARE 113
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.037
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 141 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 230
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 413 GRESATQTCYNCNKSGHISRNC 478
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.086
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVSRDSG 215
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 493
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 245 VQPPGHFARDCKEEADR--CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP-EGG 415
+ P G A + +EE C+ C GH R+ + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 416 RESATQTCYNCNKSGHISRNCPD 484
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 380 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 496
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 33.5 bits (73), Expect = 0.15
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 434 TCYNCNKSGHISRNCPDGT---KTCYVC 508
TCY+C + HI+ +CP T K+C++C
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFIC 171
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 478
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 362 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 487
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.26
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.35
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 410 GGRESATQTCYNCNKSGHISRNCP 481
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 416 RESATQTCYNCNKSGHISRNCPD 484
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 359 SCYNCNKTGHIARNCPE 409
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 404 PEGGRESATQTCYNCNKSGHISRNC 478
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 138 VCYKCNRTGHFAREC 182
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 362 CYNCNKTGHIARNC 403
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 218 QSAT*EVLQVQPPGHFARDCKEEADRCYRCNGTGHIARE 334
Q+A V +V+ P + + + CYRC GH+AR+
Sbjct: 903 QNAKTAVTEVKKP---SEETDDAVKICYRCKKVGHLARD 938
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +2
Query: 302 RCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 469
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 470 RNCP 481
CP
Sbjct: 327 MYCP 330
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.60
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 419 ESATQTCYNCNKSGHISRNCP 481
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGGVVS 203
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGGRESATQ 433
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 434 TCYNCNKSGHISRNCPDGTKTCYV 505
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.80
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 233 EVLQVQPPGHFARDCKEEADRCYRCNGTGHIAREFAQSPDE 355
+V Q++ G ++ K D C++C GH AR+ + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.60
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQGG 194
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.80
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 353 EPSCYNCNKTGHIARNCPEGG 415
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 233 EVLQVQPPGHFARDCKEEADRCYRCNGTGHIAREFAQSPDE 355
+V Q++ G ++ K D C++C GH AR+ + D+
Sbjct: 96 DVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 302 RCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGG 415
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGG 194
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 428 TQTCYNCNKSGHISRNCPD 484
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 362 CYNCNKTGHIARNCPEGG 415
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 111 SKPIAMSSSVCYKCNRTGHFAREC 182
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 290 DRCYRCNGTGHIAREFAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 463
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 464 ISRNC 478
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 138 VCYKCNRTGHFARECTQGG 194
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 323 IAREFAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 428 TQTCYNCNKSGHISRNCPD-GTKTC 499
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 349 GRAVVLQLQQDGPHRTELSRGGARVCDADLL*LQQVRPHLPQLSRRHQ 492
G +VV LQ DGPH ++R AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 493
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 383 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 481
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 481
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 481
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 457
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 458 GHIS 469
G ++
Sbjct: 128 GSLT 131
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 323 IAREFAQSP-DEPSCYNCNKTGHIARNCP 406
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 141 CYKCNRTGHFAREC 182
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 433
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 434 TCYNCNKSGHISRNCP 481
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +2
Query: 278 KEEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 433
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 434 TCYNCNKSGHISRNCP 481
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 437 CYNCNKSGHISRNCPDGTKT 496
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 3.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 362 CYNCNKTGHIARNCP 406
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 126 MSSSVCYKCNRTGHFAREC 182
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 296 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 436
C C GTGHI +E+ S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 296 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 436
C C GTGHI +E+ S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -2
Query: 506 TRSTSWCRRDSCGRCGRTCCSYSRSASQTLAPPRDSSVRCGPSC 375
T + C C RC CS S S T+ PP S+ C P C
Sbjct: 321 TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 4.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 431 QTCYNCNKSGHISRNCPD 484
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 431 QTCYNCNKSGHISRNCP 481
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 431 QTCYNCNKSGHISRNCP 481
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 473 CGRCGRTCCSYSRSASQTLAPPRDSSVRC 387
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +2
Query: 281 EEADRCYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 451
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 452 KSGHISRNCP 481
G + CP
Sbjct: 256 GKGKLP--CP 263
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 293 RCYRCNGTGHIAREFAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 415
RC CNGTG + ++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 368 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 475
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 296 CYRCNGTGHIAREFAQSPDEPSCYNCNKTGHIARNCP 406
C+RCNG+ + + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 99 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 209
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 350 DEPSCYNCNKTGHIARNCPE 409
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 437 CYNCNKSGHISRNCP 481
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -2
Query: 485 RRDSCGRCGRTC--CSY--SRSASQTLAPPRDSSVRCGPSCCSCNTTARPGS 342
R+D G G + CS S + S ++ P S G SCC C++TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAG-SCCCCSSTADSGS 111
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 349 GRAVVLQLQQDGPHRTELSRGGARVCDADLL*LQQVRPHLPQLSRRHQ 492
G +VV Q DGPH ++R AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 349 GRAVVLQLQQDGPHRTELSRGGARVCDADLL*LQQVRPHLPQLSRRHQ 492
G +VV Q DGPH ++R AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 290 DRCYRCNGTGHIAREFAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 460
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 461 HISRNC 478
IS C
Sbjct: 275 EISTPC 280
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 275 CKEEADRCYRCNGTGHIAREFA 340
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
>At2g19400.1 68415.m02263 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 527
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 262 VSWRLHLKHFSRCRLKPESRD 200
VSWR HL RL PE+RD
Sbjct: 365 VSWRTHLVFPEGARLTPEARD 385
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 323 IAREFAQSPDEPS-CYNCNKTGHIARNC 403
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 141 CYKCNRTGHFARECTQG 191
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,902
Number of Sequences: 28952
Number of extensions: 307206
Number of successful extensions: 1357
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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