Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30498X
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   2.7  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   3.5  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.7  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   4.7  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.1  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    25   6.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   8.1  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 262 NAFCFTAEIGGAVV---PTRADSQEVLPPV--ITQIIILRVXFLLHDVIPSPWKPIVNI 101
           +AF   A + G+V    P +   +  L  V  +T  I+L + F+LHD   S W+ +V I
Sbjct: 188 SAFFIVAIVAGSVCLIKPFKIPRRHFLRDVAFLTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 296 IVTTAAPPFKPKRILLHGRNRRGGG 222
           I   + PP+  +RI L G  RRG G
Sbjct: 235 IAVRSLPPYIIRRIKLRGEQRRGRG 259


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 394 AHSPPGVKWLLEPIDIYNVNAPHTLR 317
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 36  RCTGVRFPQAGTNFSNEIRTQQMFTIGFHGEGITSCNKNXTRKIIICVITGGRTSC 203
           RC+ +     G+ F N I +   F+ G HG+GI     + +R ++  +      SC
Sbjct: 220 RCSKINI--TGSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 147 KNXTRKIIICVITGGRT 197
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -1

Query: 283 LPHPSNRNAFCFTAEIGGAVVPTRADSQEVLP----PVITQIIILR 158
           +PH  + +  C++   GG      A S+ VLP    P IT   I+R
Sbjct: 400 IPHQIHFSGTCYSVAAGGWQSAALAISESVLPEVNVPPITTFSIIR 445


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 400 GRAHSPPGVKWLLEPIDIYN 341
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,237
Number of Sequences: 5004
Number of extensions: 38139
Number of successful extensions: 74
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)