Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30498X
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.16 
SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)               28   3.5  
SB_58072| Best HMM Match : Protamine_P2 (HMM E-Value=7.2)              27   6.1  
SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  

>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
 Frame = -1

Query: 373 KWLLEPIDIYNVNAPHT-LRYSSKVSV*SQRLPHP-SNRNAFCFTAEIGGAVVPTRADSQ 200
           K L  P+ +   ++    L +  + S+   R P P S R+ F        A V T   +Q
Sbjct: 394 KSLSPPLSLIRASSSSVNLSFEGQASLSMIRNPSPRSARHRFSGLLRTVQATVRTERRAQ 453

Query: 199 EVLP---PVITQIIILRVXFLLHDVIPSPWKP--IVNIC*VRISLEKLVPACGNRTPVHR 35
             LP    V    +IL + FL H      W P  +V+ C  R+   ++VP CG    + +
Sbjct: 454 SQLPREYKVARTGLILLLLFLFH------WLPYLVVHSCSTRVDASEVVPVCGGIESIAK 507

Query: 34  *IRM 23
             RM
Sbjct: 508 YHRM 511


>SB_24456| Best HMM Match : Lipase_chap (HMM E-Value=1.3)
          Length = 456

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 364 LEPIDIYNVNAPHTLRYSSKVSV*SQRLPHPSNRNAFCFTAEIGGAVVPTRADSQ 200
           +EP+   N     + R  SK +V + R+P PS   A    A++ G+ +  R  +Q
Sbjct: 1   MEPVQEGNPAKSASFRKLSKTAVEADRVPKPSQSTAKASDAKVTGSKMKNRDMAQ 55


>SB_58072| Best HMM Match : Protamine_P2 (HMM E-Value=7.2)
          Length = 187

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -2

Query: 273 LQTETHSASRQK*AGRWYLPVRTHKRSYHQ*LRKL 169
           L +ET SA   + + R+Y P R HKR Y Q L+ L
Sbjct: 34  LPSETPSAFTLRGSNRFY-PQRLHKRFYRQRLQAL 67


>SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 278 PPFKPKRILLHGRNRRGGGTYPCG 207
           P  K  R++ H R RRG  TYP G
Sbjct: 829 PAHKTFRVVYHKRMRRGMRTYPNG 852


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
 Frame = +3

Query: 126  EGITSCNKNXTRKIIICVITGGRTSCESARVGTTAPPISAVKQNAFRFEGWGSRCDYTDT 305
            +G T+   +  R   + + T G T+   +  GTTA P+      A R     +    TDT
Sbjct: 2742 DGTTAAPMSTDRTTAVPMSTDGTTAAPMSTDGTTAAPMITGSTTAVRMSTDAATSIPTDT 2801

Query: 306  LELY---LKVCGAFTL*MSMGSSNHLT 377
             E     +   GA  + MSM  +   T
Sbjct: 2802 DEATASPMSTYGATAIPMSMDGTASAT 2828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,076,744
Number of Sequences: 59808
Number of extensions: 323413
Number of successful extensions: 664
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)