Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30498X
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    27   5.4  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    27   5.4  
AF003384-11|AAL08042.1|  487|Caenorhabditis elegans Hypothetical...    27   7.1  
Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 280 PHPSNRNAFCFTAEIGGAVVPTRADSQEVLPPVITQIII 164
           P  +N   F ++  +GG    T A+S EVL  ++T +I+
Sbjct: 149 PIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIV 187


>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 292 SQRLPHPSNRNAFCFTAEIGGAVVPTRADSQEVLPPVITQIIILRV-XFLLHDVIPS 125
           S   P P+    F    +I  A  PT ADS  + PP   + II ++  F  + ++P+
Sbjct: 212 SDSTPTPTQATQFDMPTQIQTASPPTTADS-AIFPPTSPESIIQKIEQFPSNQILPN 267


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 254 LLHGRNRRGGGTYPCG 207
           L+ GRN+R GGT  CG
Sbjct: 68  LIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 254 LLHGRNRRGGGTYPCG 207
           L+ GRN+R GGT  CG
Sbjct: 68  LIFGRNKRSGGTCGCG 83


>AF003384-11|AAL08042.1|  487|Caenorhabditis elegans Hypothetical
           protein K07B1.7b protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 144 CTMLFLHRGSQS*TFVEYVFH*KNWYPPAGIE--HRC 40
           C ++ L       TF+E  FH KNW   AG++   RC
Sbjct: 91  CCLISLRSEEDRETFIEE-FHKKNWQNSAGVDIPRRC 126


>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 93  TQQMFTIGFHGEGITSCNK 149
           T+ MFT GFHG+ +   NK
Sbjct: 630 TKFMFTTGFHGQDLKDWNK 648


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,590
Number of Sequences: 27780
Number of extensions: 227257
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)