Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30498X
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   7.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   9.6  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 78 KNWYPPAGIEHRCIARYE 25
          +NW  P GI++R   R++
Sbjct: 32 RNWRKPKGIDNRVRRRFK 49


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 39  CTGVRFPQAGTNFSNEIRT 95
           C G+R+P   T  SN   T
Sbjct: 88  CCGMRWPGDATGLSNRSST 106


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 304 P*NYISRCVAHLRCRC 351
           P NY+  C   ++C C
Sbjct: 72  PQNYLGICAEGMQCSC 87


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
          protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 67 PACGNRTPV 41
          PACG+ TP+
Sbjct: 46 PACGSETPL 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,544
Number of Sequences: 438
Number of extensions: 3538
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)