Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30498X
(415 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37720.1 68415.m04625 expressed protein 29 1.2
At3g04690.1 68416.m00503 protein kinase family protein contains ... 28 2.2
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 27 3.8
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 27 3.8
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 27 3.8
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si... 27 3.8
>At2g37720.1 68415.m04625 expressed protein
Length = 482
Score = 29.1 bits (62), Expect = 1.2
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +3
Query: 72 NFSNEIRTQQMFTIGFHGEGITSCNKNXTRKIIICVITGGRTSCESARVGTTAPPISAVK 251
N N +R Q TI F G+ + + ++C+ TGG+ S E VG+ + +
Sbjct: 200 NRVNFLRRMQNKTIAFIGDSLG----REQFQSLMCMATGGKESPEVQNVGSEYGLV--IP 253
Query: 252 QNAFRFEGWGSRCDYTDTLEL 314
+ A R GW R T+T L
Sbjct: 254 KGAPRPGGWAYRFPTTNTTVL 274
>At3g04690.1 68416.m00503 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 850
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/77 (22%), Positives = 31/77 (40%)
Frame = -3
Query: 236 RRGGGTYPCGLTRGPTTSNYANYNFAGXIFIARCYSFTVEANREHLLSTYFIRKIGTRLR 57
+ G + + P+ + Y A Y ++ ++ HLL YF T L
Sbjct: 55 KTGNSIHATATYQDPSLLSTVPYMTARIFTAPATYEIPIKGDKRHLLRLYFYPSTYTGLN 114
Query: 56 ESNTGASLDTNAPDVLS 6
SN+ +++ N +LS
Sbjct: 115 ISNSYFTVEANDVTLLS 131
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 241 EIGGAVVPTRADSQEVLPPVITQI 170
++ GA+V R + QE LPP++T +
Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 241 EIGGAVVPTRADSQEVLPPVITQI 170
++ GA+V R + QE LPP++T +
Sbjct: 91 QVIGAIVDVRFEDQEGLPPIMTSL 114
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 241 EIGGAVVPTRADSQEVLPPVITQI 170
++ GA+V R + QE LPP++T +
Sbjct: 88 QVIGAIVDVRFEDQEGLPPIMTSL 111
>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
thermoamyloliquefaciens]; contains Pfam profile: PF01055
Glycosyl hydrolases family 31
Length = 991
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Frame = -1
Query: 391 HSPPGVKWLLEPIDIYNVNAPHTLRYSS-----KVSV*SQRLPHPSNRNAFCFTAEIGGA 227
H P G++WL IDI Y S + +V + L H + ++GG
Sbjct: 783 HVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYNVIERDLEHAGEEESLILEGDVGGG 842
Query: 226 VVPTR 212
+V R
Sbjct: 843 LVLRR 847
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,507
Number of Sequences: 28952
Number of extensions: 209836
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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