Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30497
(790 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B6099 Cluster: PREDICTED: similar to Mitochondr... 102 9e-21
UniRef50_UPI0000DB6B51 Cluster: PREDICTED: similar to mitochondr... 97 4e-19
UniRef50_Q9VXQ0 Cluster: CG8288-PA; n=7; Neoptera|Rep: CG8288-PA... 94 3e-18
UniRef50_Q5DGM0 Cluster: SJCHGC01793 protein; n=2; Schistosoma j... 77 5e-13
UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;... 71 4e-11
UniRef50_UPI0000E48888 Cluster: PREDICTED: similar to mitochondr... 64 3e-09
UniRef50_Q5KGQ8 Cluster: Ribosomal large subunit assembly and ma... 57 6e-07
UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal pr... 52 2e-05
UniRef50_Q0CHL1 Cluster: 60S ribosomal protein L9, mitochondrial... 48 3e-04
UniRef50_A5CCL2 Cluster: 50S ribosomal protein L3; n=1; Orientia... 47 5e-04
UniRef50_A0D1W5 Cluster: Chromosome undetermined scaffold_34, wh... 47 6e-04
UniRef50_A7SQV4 Cluster: Predicted protein; n=1; Nematostella ve... 46 0.001
UniRef50_Q9LRN8 Cluster: 50S ribosomal protein L3-2, chloroplast... 46 0.001
UniRef50_Q22HG3 Cluster: Ribosomal protein L3 containing protein... 42 0.023
UniRef50_Q580R4 Cluster: Ribosomal protein L3 mitochondrial, put... 40 0.094
UniRef50_Q7WRC5 Cluster: 50S ribosomal protein L3; n=112; Bacter... 40 0.094
UniRef50_Q2JFH6 Cluster: 50S ribosomal protein L3; n=53; Bacteri... 39 0.12
UniRef50_Q6C279 Cluster: Yarrowia lipolytica chromosome F of str... 36 0.88
UniRef50_Q5P332 Cluster: 50S ribosomal protein L3; n=9; Bacteria... 36 1.2
UniRef50_Q54I61 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_A3HUN9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.7
UniRef50_Q9P6P6 Cluster: Mitochondrial ribosomal protein subunit... 35 2.7
UniRef50_Q3YRK9 Cluster: 50S ribosomal protein L3; n=3; Anaplasm... 34 3.5
UniRef50_Q9L0E0 Cluster: 50S ribosomal protein L3; n=35; Bacteri... 34 4.7
UniRef50_Q6UCS0 Cluster: 50S ribosomal protein L3; n=1; uncultur... 33 6.2
UniRef50_Q28UW2 Cluster: 50S ribosomal protein L3; n=93; Proteob... 33 6.2
UniRef50_Q6D9N4 Cluster: Putative membrane protein; n=1; Pectoba... 33 8.2
UniRef50_Q08TH3 Cluster: 50S ribosomal protein L3; n=2; Cystobac... 33 8.2
UniRef50_Q4UEX7 Cluster: Putative uncharacterized protein; n=1; ... 33 8.2
>UniRef50_UPI00015B6099 Cluster: PREDICTED: similar to Mitochondrial
39S ribosomal protein L3; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to Mitochondrial 39S ribosomal
protein L3 - Nasonia vitripennis
Length = 375
Score = 102 bits (245), Expect = 9e-21
Identities = 46/88 (52%), Positives = 61/88 (69%)
Frame = +3
Query: 510 EYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPE 689
EYKPMI + + GC+LVGA++ DP + TK+YCG+F+ G++PKR L RF VSPE
Sbjct: 146 EYKPMITQKKNPLPRNT-GCLLVGADSCDPQLFTKEYCGLFNEAGVMPKRLLARFHVSPE 204
Query: 690 SALPNGTPLYATHFRVGDCIDIRSNVND 773
AL GTPL+ATH+++G IDIR D
Sbjct: 205 GALQPGTPLFATHYKIGQYIDIRGKTID 232
Score = 90.2 bits (214), Expect = 5e-17
Identities = 46/86 (53%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVT-WTPQTKRVGLIARKIGNYPLW 432
ENK+F++ VI+DK A SP+ + + VT W P +RVG++ARKIG P+W
Sbjct: 62 ENKEFIQTVIRDKYPLPDIGFGSA--SPLKLETIEPVTEWKPHYQRVGVLARKIGIVPMW 119
Query: 433 CKDGKKVSTTLLQVVDNHVIKYIPPE 510
KDGKKV TT+ QV DNHVIKYIPPE
Sbjct: 120 MKDGKKVLTTMFQVADNHVIKYIPPE 145
>UniRef50_UPI0000DB6B51 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein L3 CG8288-PA; n=1; Apis mellifera|Rep:
PREDICTED: similar to mitochondrial ribosomal protein L3
CG8288-PA - Apis mellifera
Length = 352
Score = 97.1 bits (231), Expect = 4e-19
Identities = 45/86 (52%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILND-VKKNVTWTPQTKRVGLIARKIGNYPLW 432
ENK+FL E++ + L TSP+ N+ ++ N TWTP +KR GLI +KIG YP+W
Sbjct: 49 ENKEFLSEIVSS---TKGLLNNN--TSPLNNELIQSNATWTPNSKRTGLIGKKIGVYPMW 103
Query: 433 CKDGKKVSTTLLQVVDNHVIKYIPPE 510
K+G+KV TTL+Q+VDN V+KYIPPE
Sbjct: 104 LKNGRKVLTTLIQIVDNEVVKYIPPE 129
Score = 92.7 bits (220), Expect = 1e-17
Identities = 42/88 (47%), Positives = 60/88 (68%)
Frame = +3
Query: 510 EYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPE 689
EYKP+ ++ + K GC+++GA N+DP ++TK+Y GIF+ G+ PK+ L RF +SP
Sbjct: 130 EYKPV--KPIRHRIEVKNGCLVLGAINVDPQLLTKEYYGIFNKAGVTPKKVLMRFTISPN 187
Query: 690 SALPNGTPLYATHFRVGDCIDIRSNVND 773
+ L GTPLYATHF+ G+ IDIR D
Sbjct: 188 AVLQPGTPLYATHFKPGEFIDIRGKTID 215
>UniRef50_Q9VXQ0 Cluster: CG8288-PA; n=7; Neoptera|Rep: CG8288-PA -
Drosophila melanogaster (Fruit fly)
Length = 362
Score = 94.3 bits (224), Expect = 3e-18
Identities = 40/73 (54%), Positives = 55/73 (75%)
Frame = +3
Query: 558 KYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRV 737
K GCILVG+E +P+++TK+Y GIF + G+LPK++L RF+VSPE+ L GTPL HFRV
Sbjct: 154 KRGCILVGSETTNPALLTKEYAGIFRNSGVLPKKNLARFIVSPEAQLAPGTPLNVNHFRV 213
Query: 738 GDCIDIRSNVNDY 776
GD +D+R D+
Sbjct: 214 GDFVDVRGKTVDH 226
Score = 91.5 bits (217), Expect = 2e-17
Identities = 41/85 (48%), Positives = 54/85 (63%)
Frame = +1
Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWC 435
ENKQF+ EV + ++ + + WTP +R G+IARKIG YPLW
Sbjct: 57 ENKQFVNEVGTNNFGVPAVIKDSLVKTA--GPTANEAVWTPNLRRCGVIARKIGQYPLWL 114
Query: 436 KDGKKVSTTLLQVVDNHVIKYIPPE 510
K+G+++ TTLLQ+VDNHVIKYIPPE
Sbjct: 115 KNGERIRTTLLQIVDNHVIKYIPPE 139
>UniRef50_Q5DGM0 Cluster: SJCHGC01793 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC01793 protein - Schistosoma
japonicum (Blood fluke)
Length = 391
Score = 77.0 bits (181), Expect = 5e-13
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQ-TKRVGLIARKIGNYPLW 432
ENK+FLE + ++EA T TSPI+ + V WTP T+R GLIA K+G YPLW
Sbjct: 59 ENKEFLE---RQRIEALT-------TSPIITEQWTQVPWTPYVTQRCGLIAIKLGVYPLW 108
Query: 433 CKDGKKVSTTLLQVVDNHVIKYIPP 507
K G+K+ T+ QV DNH ++Y PP
Sbjct: 109 TKTGEKMDCTVFQVPDNHALRYTPP 133
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = +3
Query: 543 WVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYA 722
W+ ++++G LVGA + D + G+ PKR + RF+VSP++AL GTPL
Sbjct: 158 WITQKRWGIQLVGAFSADLLNSLLNGVAYLKEAGVPPKRKISRFLVSPDAALKPGTPLSV 217
Query: 723 THFRVGDCIDI 755
HFRVGD +DI
Sbjct: 218 HHFRVGDYLDI 228
>UniRef50_P09001 Cluster: Mitochondrial 39S ribosomal protein L3;
n=31; Deuterostomia|Rep: Mitochondrial 39S ribosomal
protein L3 - Homo sapiens (Human)
Length = 348
Score = 70.5 bits (165), Expect = 4e-11
Identities = 38/88 (43%), Positives = 53/88 (60%)
Frame = +1
Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWC 435
EN F+++++ D+ +AQ A + P+ ++ W P + RVGLIA K+G PLW
Sbjct: 56 ENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWT 111
Query: 436 KDGKKVSTTLLQVVDNHVIKYIPPENTN 519
KDG+K TLLQV D HV+KY EN N
Sbjct: 112 KDGQKHVVTLLQVQDCHVLKYTSKENCN 139
Score = 41.1 bits (92), Expect = 0.031
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 558 KYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRV 737
K + VG + + + +G+ PK+ + F ++ +A+ GTPLYA HFR
Sbjct: 141 KMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRP 200
Query: 738 GDCIDI 755
G +D+
Sbjct: 201 GQYVDV 206
>UniRef50_UPI0000E48888 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein L3; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mitochondrial
ribosomal protein L3 - Strongylocentrotus purpuratus
Length = 343
Score = 64.5 bits (150), Expect = 3e-09
Identities = 30/63 (47%), Positives = 42/63 (66%)
Frame = +1
Query: 316 EKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIK 495
+ K + SP+ WTPQ+KR G+IA K+G PLW K+GK+V TTLLQV++ +VI
Sbjct: 90 QTKHMMSPLKQAPWLKGEWTPQSKRAGVIAIKLGMQPLWTKEGKRVPTTLLQVLECNVID 149
Query: 496 YIP 504
+ P
Sbjct: 150 FHP 152
Score = 59.3 bits (137), Expect = 1e-07
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +3
Query: 564 GCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGD 743
G +LV A+N P ++Y +F SV + K H+ F V+ +AL GTPLYA HFR G
Sbjct: 162 GTVLVAAKNAPPYYKDEEYADLFKSVCLPVKEHITSFNVTDNAALQPGTPLYAAHFRPGM 221
Query: 744 CIDIRSNVND 773
+DI + D
Sbjct: 222 YVDIAAKTID 231
>UniRef50_Q5KGQ8 Cluster: Ribosomal large subunit assembly and
maintenance-related protein, putative; n=1;
Filobasidiella neoformans|Rep: Ribosomal large subunit
assembly and maintenance-related protein, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 308
Score = 56.8 bits (131), Expect = 6e-07
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +1
Query: 370 WTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPENTN 519
WTPQT R GLIARK G LW DG++ T+LQV N V+++ PP T+
Sbjct: 38 WTPQTLRTGLIARKRGMTALWDADGRRWPVTVLQVDANQVVRHSPPPPTS 87
Score = 44.0 bits (99), Expect = 0.004
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +3
Query: 561 YGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVG 740
Y + +GA TK G F G+ PK L F VS ++ +P GT L A HF G
Sbjct: 89 YHTLQIGASPRREKTTTKQQLGHFKKAGVEPKYRLKEFQVSEDAVVPVGTELSAGHFVPG 148
Query: 741 DCIDIR 758
+D++
Sbjct: 149 QFVDVQ 154
>UniRef50_P49404 Cluster: Putative mitochondrial 39S ribosomal
protein L3; n=2; Caenorhabditis|Rep: Putative
mitochondrial 39S ribosomal protein L3 - Caenorhabditis
elegans
Length = 403
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Frame = +1
Query: 304 QTALEKKALTSPIL---NDVKKNVTWTP---QTKRVGLIARKIGNYPLWCKDGKKVSTTL 465
+T +EK+ L + + N + NV+ ++RVGL+ RKIG P W +G ++ T+
Sbjct: 68 ETVIEKETLAASTIAFQNSQETNVSVVDIPDSSRRVGLVVRKIGMLPQWTNEGNRILCTV 127
Query: 466 LQVVDNHVIKYIPPE 510
L+V +NHV+ PE
Sbjct: 128 LEVDENHVVSITSPE 142
Score = 39.1 bits (87), Expect = 0.12
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 570 ILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN-GTPLYATHFRVGDC 746
+ VGA N DP+ T Y F G+ K L F+V+ E ALP+ G PL A HF VG
Sbjct: 165 VTVGAGNDDPTKYTLGYRRQFVRAGIPVKEKLGCFLVT-EDALPSAGQPLDARHFGVGQY 223
Query: 747 IDIRSNVNDY 776
+ D+
Sbjct: 224 VTATGKTIDW 233
>UniRef50_Q0CHL1 Cluster: 60S ribosomal protein L9, mitochondrial;
n=11; Eukaryota|Rep: 60S ribosomal protein L9,
mitochondrial - Aspergillus terreus (strain NIH 2624)
Length = 335
Score = 48.0 bits (109), Expect = 3e-04
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 561 YGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESA-LPNGTPLYATHFRV 737
Y + VGA PS VTK G F + G+ PKRH+ F V E+ LP G + A+ FR
Sbjct: 159 YYAVQVGAGWKHPSNVTKSLLGHFSAHGVSPKRHVFEFRVRDEAGLLPVGRDIPASWFRE 218
Query: 738 GDCIDIRS 761
G +D RS
Sbjct: 219 GQFVDARS 226
>UniRef50_A5CCL2 Cluster: 50S ribosomal protein L3; n=1; Orientia
tsutsugamushi Boryong|Rep: 50S ribosomal protein L3 -
Orientia tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 229
Score = 47.2 bits (107), Expect = 5e-04
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +3
Query: 540 KWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLY 719
K V K Y +++G +NI P V K IF + PK + F V+ + L + L
Sbjct: 55 KLVSKDGYNAVILGYKNISPFKVKKPMHSIFSRAKIEPKAIIKEFKVAEDKMLEIASILD 114
Query: 720 ATHFRVGDCIDIR 758
A++FRVG +D+R
Sbjct: 115 ASYFRVGQYVDVR 127
>UniRef50_A0D1W5 Cluster: Chromosome undetermined scaffold_34, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_34,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 409
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = +3
Query: 537 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPL 716
V+ V+ Y + +GA ++ + K G F + PK+++ F ++PE+ LP G L
Sbjct: 184 VQVVKNDTYTGLQIGAGRVNIKTLKKPQIGHFLKANIPPKKYIKEFPITPENTLPVGFML 243
Query: 717 YATHFRVGDCIDIR 758
A HF G IDI+
Sbjct: 244 TARHFTPGQYIDIQ 257
Score = 33.9 bits (74), Expect = 4.7
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +1
Query: 385 KRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYI 501
KR GLIA K+G W K G + + T+LQ+ +N V++ +
Sbjct: 149 KRAGLIAVKVGMTAQWDKWGYRHALTVLQLDNNQVVQVV 187
>UniRef50_A7SQV4 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 264
Score = 45.6 bits (103), Expect = 0.001
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 576 VGAEN-IDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRVGDCID 752
VGA N ++ + + K G F + PKR +C F V+P++ L GTP+ A HF G +
Sbjct: 61 VGAVNKLELNQIGKAQFGHFKRFSVRPKRKVCSFPVTPDALLTPGTPITAAHFYPGQYVK 120
Query: 753 IRSNVND 773
I+ D
Sbjct: 121 IQGVTKD 127
Score = 42.7 bits (96), Expect = 0.010
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 370 WTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIK 495
W +KR G + K+G LW KDG+++ TL+Q+ D V++
Sbjct: 2 WQKSSKRTGAVGVKLGMSALWLKDGRRLPVTLIQIKDCEVVQ 43
>UniRef50_Q9LRN8 Cluster: 50S ribosomal protein L3-2, chloroplast
precursor; n=6; Magnoliophyta|Rep: 50S ribosomal protein
L3-2, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 324
Score = 45.6 bits (103), Expect = 0.001
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +3
Query: 525 IKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 704
I S VK VEK+ + +G P ++K G F + G+ KR L F V+ ++ LP
Sbjct: 108 IVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPV 167
Query: 705 GTPLYATHFRVGDCIDI 755
GT L HF G +D+
Sbjct: 168 GTSLGVRHFVPGQYVDV 184
Score = 34.7 bits (76), Expect = 2.7
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 379 QTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHV 489
++KR G+IA K G LW K GK++ ++L V DN V
Sbjct: 73 RSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIV 109
>UniRef50_Q22HG3 Cluster: Ribosomal protein L3 containing protein;
n=1; Tetrahymena thermophila SB210|Rep: Ribosomal
protein L3 containing protein - Tetrahymena thermophila
SB210
Length = 488
Score = 41.5 bits (93), Expect = 0.023
Identities = 26/74 (35%), Positives = 33/74 (44%)
Frame = +3
Query: 537 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPL 716
VK EK + +G + K G + PKRHL F VSP+ LP G L
Sbjct: 270 VKTEEKDGVNALQLGVGEKSLKRINKPTIGHLMKNDIPPKRHLKEFKVSPDCFLPAGYML 329
Query: 717 YATHFRVGDCIDIR 758
A HF G +DI+
Sbjct: 330 SARHFVPGQYVDIQ 343
>UniRef50_Q580R4 Cluster: Ribosomal protein L3 mitochondrial,
putative; n=6; Trypanosomatidae|Rep: Ribosomal protein
L3 mitochondrial, putative - Trypanosoma brucei
Length = 473
Score = 39.5 bits (88), Expect = 0.094
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 570 ILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCR-FVVSPESALPNGTPLYATHFRVGDC 746
+ VGA N+ P K + F +P +H+C F ++P++ P GT L HF+ G
Sbjct: 185 VYVGAMNV-PVEFHKPHVAAFYKAAGVPVKHVCAGFPITPDAYAPVGTKLDVRHFKPGQE 243
Query: 747 IDIRSNVNDY 776
+ I DY
Sbjct: 244 VTITFQNTDY 253
>UniRef50_Q7WRC5 Cluster: 50S ribosomal protein L3; n=112;
Bacteria|Rep: 50S ribosomal protein L3 - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 233
Score = 39.5 bits (88), Expect = 0.094
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 361 NVTWTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHV 489
N T TP R+GL+ RK+G ++ +DG+ + T+L V +N V
Sbjct: 7 NSTPTPAAHRLGLVGRKVGMTRIFTEDGESIPVTVLDVSNNRV 49
>UniRef50_Q2JFH6 Cluster: 50S ribosomal protein L3; n=53;
Bacteria|Rep: 50S ribosomal protein L3 - Frankia sp.
(strain CcI3)
Length = 235
Score = 39.1 bits (87), Expect = 0.12
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +3
Query: 519 PMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESAL 698
P + + VK + Y + +G +DP + K G F + G+ P+RHL +
Sbjct: 36 PNVVTQVKTPDSDGYSAVQLGYGEVDPRKINKPARGHFATSGVTPRRHLVELRTADAGNY 95
Query: 699 PNGTPLYATHFRVGDCIDI 755
G L F G +D+
Sbjct: 96 RPGQELTGEVFSAGTVVDV 114
>UniRef50_Q6C279 Cluster: Yarrowia lipolytica chromosome F of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome F of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 277
Score = 36.3 bits (80), Expect = 0.88
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 540 KWVEKQKYGCILVGAENIDPSV--VTKDYCGIFDSVGMLPKRHLCRFVV-SPESALPNGT 710
K EK Y + VG + + ++ + K G F + + PK+ + F + + LP T
Sbjct: 85 KTEEKHGYNAVQVGMGHRNKALQKMNKSKLGQFSAATVNPKQAVAEFRIRGKDGLLPITT 144
Query: 711 PLYATHFRVGDCIDIRS 761
+ A+HF+VG +D+++
Sbjct: 145 EITASHFKVGQYVDVQA 161
>UniRef50_Q5P332 Cluster: 50S ribosomal protein L3; n=9;
Bacteria|Rep: 50S ribosomal protein L3 - Azoarcus sp.
(strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 214
Score = 35.9 bits (79), Expect = 1.2
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 391 VGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEN 513
+GL+ RK+G ++ +DG+ V T+L V +N V + PE+
Sbjct: 3 LGLVGRKVGMTRIFAEDGRSVPVTVLDVSNNRVTQIKTPES 43
>UniRef50_Q54I61 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 351
Score = 35.1 bits (77), Expect = 2.0
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 570 ILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESA-LPNGTPLYATHFRVGDC 746
I VGA+ I V+K G F + PKR L F V+ + L GTP+ HF G
Sbjct: 112 IQVGADEIKLKNVSKTLQGHFAKANVPPKRVLMEFRVTRNAMNLELGTPILPKHFLPGQL 171
Query: 747 IDIR 758
I ++
Sbjct: 172 ITVK 175
>UniRef50_A3HUN9 Cluster: Putative uncharacterized protein; n=1;
Algoriphagus sp. PR1|Rep: Putative uncharacterized
protein - Algoriphagus sp. PR1
Length = 812
Score = 34.7 bits (76), Expect = 2.7
Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +1
Query: 307 TALEKKALTSPILNDVK-KNVTWTPQTK 387
+ LE K L+ PILNDV +++TWTP+ K
Sbjct: 150 STLEAKKLSEPILNDVMGRSLTWTPENK 177
>UniRef50_Q9P6P6 Cluster: Mitochondrial ribosomal protein subunit
L9; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit L9 - Schizosaccharomyces pombe
(Fission yeast)
Length = 259
Score = 34.7 bits (76), Expect = 2.7
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 534 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN-GT 710
+V+ EK Y + VG+ P +TK G F S + PK H+ F V S L + GT
Sbjct: 79 DVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGT 138
Query: 711 PLYATHFRVGDCIDIR 758
+F+ +D++
Sbjct: 139 IFTTDYFKPKQYVDVK 154
>UniRef50_Q3YRK9 Cluster: 50S ribosomal protein L3; n=3;
Anaplasmataceae|Rep: 50S ribosomal protein L3 -
Ehrlichia canis (strain Jake)
Length = 231
Score = 34.3 bits (75), Expect = 3.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 385 KRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVI 492
KR+GL K+G+ ++ +GK++ TLL + D+ +I
Sbjct: 3 KRIGLFLEKVGHTAIFDNEGKRIPVTLLHLRDSFII 38
>UniRef50_Q9L0E0 Cluster: 50S ribosomal protein L3; n=35;
Bacteria|Rep: 50S ribosomal protein L3 - Streptomyces
coelicolor
Length = 214
Score = 33.9 bits (74), Expect = 4.7
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +3
Query: 519 PMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESAL 698
P + + V+ + Y + + IDP V K G F + P+RHL + S
Sbjct: 35 PNVVTQVRTNDVDGYESVQIAFGEIDPRKVNKPLKGHFAKADVTPRRHLVEIRTAAASEY 94
Query: 699 PNGTPLYATHFRVGDCIDI 755
G + A F G +D+
Sbjct: 95 TLGQEITAEAFESGVKVDV 113
>UniRef50_Q6UCS0 Cluster: 50S ribosomal protein L3; n=1; uncultured
marine alpha proteobacterium HOT2C01|Rep: 50S ribosomal
protein L3 - uncultured marine alpha proteobacterium
HOT2C01
Length = 229
Score = 33.5 bits (73), Expect = 6.2
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 388 RVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPENTN 519
R G+IA+KIG L+ + G + T+L V + +I + EN N
Sbjct: 2 RSGIIAKKIGMSNLYTQSGTNIPVTVLHVENCKIIDRVTSENEN 45
Score = 33.1 bits (72), Expect = 8.2
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 549 EKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATH 728
E + +LVGA + + K G FD ++L F +S + + +G L A+H
Sbjct: 42 ENENSDKVLVGACKLKKT--KKSQKGFFDKKKTDAYKYLREFEISKDQEIKSGDELKASH 99
Query: 729 FRVGDCIDI 755
F+ G ID+
Sbjct: 100 FKEGQFIDV 108
>UniRef50_Q28UW2 Cluster: 50S ribosomal protein L3; n=93;
Proteobacteria|Rep: 50S ribosomal protein L3 -
Jannaschia sp. (strain CCS1)
Length = 290
Score = 33.5 bits (73), Expect = 6.2
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +3
Query: 540 KWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLY 719
K + Y + +GA + G+F + PKR L F V ++ + G +
Sbjct: 40 KTSDSDGYSAVQLGAGTAKAKRTSAPMRGVFAKASVEPKRKLVEFRVDADNLIEVGEEII 99
Query: 720 ATHFRVGDCIDI 755
A H+ G +D+
Sbjct: 100 ADHYFEGQFVDV 111
>UniRef50_Q6D9N4 Cluster: Putative membrane protein; n=1;
Pectobacterium atrosepticum|Rep: Putative membrane
protein - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 129
Score = 33.1 bits (72), Expect = 8.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Frame = +3
Query: 672 FVVSPESALPNGTPLYATHFRVG--------DCIDIRSNVNDYYISS 788
F++SP+ L +GTP+Y T+++ G +C + N N YY S
Sbjct: 81 FLISPKKGLGDGTPVYVTNYQSGSYDSYDSHECGSYKENPNKYYRDS 127
>UniRef50_Q08TH3 Cluster: 50S ribosomal protein L3; n=2;
Cystobacterineae|Rep: 50S ribosomal protein L3 -
Stigmatella aurantiaca DW4/3-1
Length = 259
Score = 33.1 bits (72), Expect = 8.2
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 549 EKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESA--LPNGTPLYA 722
EK +Y + +G I V+ + G F +RHL F V+PE A G + A
Sbjct: 77 EKDQYSAVTLGFGEIREKVLNQAQRGFFKKNSAALRRHLKEFRVTPEDAAQFNVGDAVKA 136
Query: 723 THFRVGDCIDI 755
F G +D+
Sbjct: 137 DLFTKGQLVDV 147
>UniRef50_Q4UEX7 Cluster: Putative uncharacterized protein; n=1;
Theileria annulata|Rep: Putative uncharacterized protein
- Theileria annulata
Length = 765
Score = 33.1 bits (72), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 504 SGEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSV 641
+G++K ++K N +WVE + NID S+ + G F+ V
Sbjct: 118 NGDFKKLVKQNYEWVEVNDLKIDISNNRNIDTSMYVIQHSGSFNEV 163
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,077,982
Number of Sequences: 1657284
Number of extensions: 16433049
Number of successful extensions: 40008
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 38525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39983
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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