Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30497
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    35   0.015
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    27   4.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   4.0  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   4.0  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   5.4  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   7.1  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.1  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   9.4  

>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 534 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN-GT 710
           +V+  EK  Y  + VG+    P  +TK   G F S  + PK H+  F V   S L + GT
Sbjct: 79  DVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDASGLVSPGT 138

Query: 711 PLYATHFRVGDCIDIR 758
                +F+    +D++
Sbjct: 139 IFTTDYFKPKQYVDVK 154


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +1

Query: 304  QTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDN 483
            Q    K++L S  +++ KK   +  +  +V L+   I N     K   +   T  + V+N
Sbjct: 1602 QNKPSKESLKSDTISNEKK--VFPQKASKVNLLTPTISNGTRASKHANEKENTFPRGVEN 1659

Query: 484  HVIKYIPPENTNL 522
            +++  + P NT L
Sbjct: 1660 NLVAPMIPNNTEL 1672


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +2

Query: 380 KQKEWDLLHER*ETIHYGVKMVKRYPQLCYRLLTIMLS 493
           K+++W+    + E I++G++ V   P +   L++ + S
Sbjct: 254 KKQDWEAALAKIEEIYFGIRPVSNQPNILANLMSSLFS 291


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 212  YVPKERVWTDDYLTKKINNSWR 277
            Y  K+R W  +Y  K++  SW+
Sbjct: 1038 YTMKKRFWIKEYFLKEVQASWK 1059


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 637 LSNIPQ*SLVTTLGSMFSAPTNIQPYF 557
           + N PQ S    L + FS P N QP F
Sbjct: 316 IQNQPQQSAFQNLNTQFSLPNNSQPVF 342


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 78  KIVKTLCSQIV*NYYGVLYKNRGLIMRRVIFVVHRGSLDFVHRIGMSQKRECGQ 239
           KI ++  S  +  YYG  Y N    +   +     GSLD +++   SQ    G+
Sbjct: 127 KINRSCTSPYIVKYYGACYNNAECQLNIAMEYCGAGSLDAIYKRVRSQGGRTGE 180


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 188 PRFRPPYWYVPKERVWTDDYLTKKINN 268
           P   PP +Y+    V+ D YLTK + N
Sbjct: 371 PLRHPPIFYIGHVPVFNDIYLTKIVKN 397


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 164 NIRGASRQPRFRPPYWYVPKERVWTDDYLTKKINNSWRK 280
           NI  ++ +P+ RP    VPK +V  +   T  INNS  K
Sbjct: 387 NIEVSANEPQPRPVKEDVPKSQVGGETDTTDVINNSTPK 425


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 695 SRFW*YNKSAEVPFWQHSNTVKYSTVIFGDN 603
           SR+W Y    E+P W         + IFG N
Sbjct: 86  SRWWGYVNRIEIPLWMRVPAFGLYSKIFGCN 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,366,762
Number of Sequences: 5004
Number of extensions: 75584
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)