Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30497
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1051 + 8290395-8290760,8291611-8291820,8292874-8292978,829...    41   0.001
02_01_0295 - 1973115-1973404,1974138-1974663                           37   0.021
12_01_0074 - 615794-615883,616186-616391,616524-616614                 30   1.8  
03_06_0199 + 32310272-32311432                                         28   9.7  

>01_01_1051 +
           8290395-8290760,8291611-8291820,8292874-8292978,
           8293040-8293048,8294426-8294539,8294632-8294796
          Length = 322

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +3

Query: 537 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPL 716
           VK  EK+ +  + +GA       +TK   G F + G+  KR L  F V+ ++ +P GT +
Sbjct: 110 VKTAEKEGFFALQLGAGQKKEKHLTKPEVGHFRAQGVPLKRKLREFPVTEDALIPLGTTI 169

Query: 717 YATHFRVGDCIDI 755
              HF  G  +D+
Sbjct: 170 TVRHFVPGQFVDV 182


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +3

Query: 525 IKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 704
           + + VK      Y  + VG   +    +T+   G     G  P RHL  F +        
Sbjct: 88  VVTQVKTAATDGYDAVQVGYHGVREEKLTRPELGHLGKAGAPPLRHLQEFRLQSVDGYDP 147

Query: 705 GTPL-YATHFRVGDCIDI 755
           G PL +A  F+ GD +DI
Sbjct: 148 GQPLDFADMFKEGDLVDI 165


>12_01_0074 - 615794-615883,616186-616391,616524-616614
          Length = 128

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1

Query: 298 EAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCK 438
           E +  +E +AL + I    K+   W   T  +  + ++IG+Y  W K
Sbjct: 63  ERRIEIEARALLATIARYKKQTDQWLAATNAINSVLKEIGDYENWMK 109


>03_06_0199 + 32310272-32311432
          Length = 386

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 170 RGAS-RQPRFRPPYWYVPKERVWTD 241
           RGAS R PRFRP +W +  E   TD
Sbjct: 18  RGASARDPRFRPRHWAMLDEVFQTD 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,582,319
Number of Sequences: 37544
Number of extensions: 438946
Number of successful extensions: 985
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)