Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30497
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)                      28   7.5  
SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)                28   9.9  

>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +1

Query: 277 EVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCKDGKKVS 456
           E ++ ++E Q  L+ +    P+       V W   +KR G +  K+G   LW KDG+++ 
Sbjct: 336 EDMQVEIERQKRLQDR---QPVAIPAPGEVEWQKSSKRTGAVGVKLGMSALWLKDGRRLP 392

Query: 457 TTLLQVVDNHVIK 495
            TL+Q+ D  V++
Sbjct: 393 VTLIQIKDCEVVQ 405



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 576 VGAEN-IDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNG 707
           VGA N ++ + + K   G F    + PKR +C F V+P++ L  G
Sbjct: 423 VGAVNKLELNQIGKAQFGHFKRFSVRPKRKVCSFPVTPDALLTPG 467


>SB_35384| Best HMM Match : PRA1 (HMM E-Value=6.7)
          Length = 654

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +3

Query: 537 VKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 704
           +  + KQ+   +L+G +    +V+TK YC  +D     P+ H+ + +    +  PN
Sbjct: 164 INCIAKQEKAVLLIGEQGTAKTVMTKGYCERYD-----PELHVFKAMNFSSATTPN 214


>SB_28247| Best HMM Match : Na_Ca_ex (HMM E-Value=2e-27)
          Length = 236

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 604 TLGSMFSAPTNIQPYFCFSTHFTLDFIIGLYSPEV 500
           TLGS FS P N+ P  C+     ++    L  P+V
Sbjct: 24  TLGSPFSPPENVWPRICWVLGLPINLSFFLTIPDV 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,201,316
Number of Sequences: 59808
Number of extensions: 535140
Number of successful extensions: 1307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)