Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30497
         (790 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA...    71   6e-12
CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.                71   6e-12
BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal...    71   6e-12

>X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA
           for ribosomal protein L3 homologue ( MRL3 =  mammalian
           ribosome L3 ).  ).
          Length = 348

 Score = 70.5 bits (165), Expect = 6e-12
 Identities = 38/88 (43%), Positives = 53/88 (60%)
 Frame = +1

Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWC 435
           EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGLIA K+G  PLW 
Sbjct: 56  ENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWT 111

Query: 436 KDGKKVSTTLLQVVDNHVIKYIPPENTN 519
           KDG+K   TLLQV D HV+KY   EN N
Sbjct: 112 KDGQKHVVTLLQVQDCHVLKYTSKENCN 139



 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 558 KYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRV 737
           K   + VG + +            +  +G+ PK+ +  F ++  +A+  GTPLYA HFR 
Sbjct: 141 KMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRP 200

Query: 738 GDCIDI 755
           G  +D+
Sbjct: 201 GQYVDV 206


>CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.
          Length = 348

 Score = 70.5 bits (165), Expect = 6e-12
 Identities = 38/88 (43%), Positives = 53/88 (60%)
 Frame = +1

Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWC 435
           EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGLIA K+G  PLW 
Sbjct: 56  ENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWT 111

Query: 436 KDGKKVSTTLLQVVDNHVIKYIPPENTN 519
           KDG+K   TLLQV D HV+KY   EN N
Sbjct: 112 KDGQKHVVTLLQVQDCHVLKYTSKENCN 139



 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 558 KYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRV 737
           K   + VG + +            +  +G+ PK+ +  F ++  +A+  GTPLYA HFR 
Sbjct: 141 KMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRP 200

Query: 738 GDCIDI 755
           G  +D+
Sbjct: 201 GQYVDV 206


>BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal
           protein L3 protein.
          Length = 348

 Score = 70.5 bits (165), Expect = 6e-12
 Identities = 38/88 (43%), Positives = 53/88 (60%)
 Frame = +1

Query: 256 ENKQFLEEVIKDKLEAQTALEKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWC 435
           EN  F+++++ D+ +AQ A +      P+ ++      W P + RVGLIA K+G  PLW 
Sbjct: 56  ENVPFIKQLVSDEDKAQLASK----LCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWT 111

Query: 436 KDGKKVSTTLLQVVDNHVIKYIPPENTN 519
           KDG+K   TLLQV D HV+KY   EN N
Sbjct: 112 KDGQKHVVTLLQVQDCHVLKYTSKENCN 139



 Score = 41.1 bits (92), Expect = 0.004
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 558 KYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPNGTPLYATHFRV 737
           K   + VG + +            +  +G+ PK+ +  F ++  +A+  GTPLYA HFR 
Sbjct: 141 KMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRP 200

Query: 738 GDCIDI 755
           G  +D+
Sbjct: 201 GQYVDV 206


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,783,519
Number of Sequences: 237096
Number of extensions: 2572293
Number of successful extensions: 9330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9330
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)