Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30497
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17465.1 68416.m02230 ribosomal protein L3 family protein           46   4e-05
At3g63280.1 68416.m07111 protein kinase family protein contains ...    29   3.5  
At4g02420.1 68417.m00327 lectin protein kinase, putative similar...    29   4.6  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    28   8.1  
At1g37050.1 68414.m04624 hypothetical protein                          28   8.1  
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi...    28   8.1  

>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 27/77 (35%), Positives = 39/77 (50%)
 Frame = +3

Query: 525 IKSNVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESALPN 704
           I S VK VEK+    + +G     P  ++K   G F + G+  KR L  F V+ ++ LP 
Sbjct: 108 IVSQVKTVEKEGIFALQIGCGQKKPKHLSKAVVGHFRAQGVPLKRKLREFPVTEDALLPV 167

Query: 705 GTPLYATHFRVGDCIDI 755
           GT L   HF  G  +D+
Sbjct: 168 GTSLGVRHFVPGQYVDV 184



 Score = 34.7 bits (76), Expect = 0.071
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +1

Query: 379 QTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHV 489
           ++KR G+IA K G   LW K GK++  ++L V DN V
Sbjct: 73  RSKRTGIIAVKCGMTALWDKWGKRIPISILWVDDNIV 109


>At3g63280.1 68416.m07111 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 555

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 543 WVEKQKYGCILVG-AENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPESAL 698
           WVEK  Y CI++G  +  D +   K  CG+       P+  LC+++V    AL
Sbjct: 70  WVEKGCYVCIVIGYCQGGDMTDTIKRACGVH-----FPEEKLCQWLVQLLMAL 117


>At4g02420.1 68417.m00327 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 669

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 627 IFDSVGMLPKRHLCRFVVSPESALPNGTPL-YATHFRVGDCIDIRSNV 767
           +F     +P  H   FV++P   LP G+PL Y   F V +  ++R++V
Sbjct: 91  VFAIHSQIPIAHGMAFVIAPNPRLPFGSPLQYLGLFNVTNNGNVRNHV 138


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +2

Query: 575 SW-C*KHRP*CCHQRLLWNI*QCWNAAKKAPLQICCITR-----ICFTKWH 709
           SW C K +  CC + LLW    CW       + I C+ +     I   KWH
Sbjct: 243 SWGCRKKKCYCCDEILLWIFYYCW--VCDCGMNIACVEKLPLLSIHHPKWH 291


>At1g37050.1 68414.m04624 hypothetical protein
          Length = 620

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 516 KPMIKSNVKWVEKQKYGCIL 575
           K M   + KWV++QK+GC++
Sbjct: 390 KSMHSKSQKWVKEQKFGCLI 409


>At1g24440.1 68414.m03079 expressed protein similar to MTD2
           [Medicago truncatula] GI:9294812
          Length = 251

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 486 CYQIY-TSGEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVTK-DYCGIFDSVGMLPK 656
           CY+ + T  E  P  + ++K V  +    +    + +DP  VTK D    +  +  LPK
Sbjct: 178 CYRNWNTKSESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPK 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,654
Number of Sequences: 28952
Number of extensions: 376723
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)