Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30496
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 97 9e-21
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 97 9e-21
07_03_1556 + 27692770-27694119 29 3.6
10_08_0620 - 19321612-19323237 29 4.8
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 28 6.3
10_08_0694 - 19929918-19930292,19930633-19930866 28 8.3
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 28 8.3
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 28 8.3
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +2
Query: 20 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 199
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 200 PTVRYHTKVRAGRGFTLREL 259
T++Y+ K RAGRGFTL EL
Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80
Score = 87.4 bits (207), Expect = 1e-17
Identities = 42/84 (50%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +1
Query: 262 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 438
AAG+ FA TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ E
Sbjct: 82 AAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPE 141
Query: 439 ERKLATQLRGPLMPVQQPAPKSVE 510
E ATQ++G MP+ + +SVE
Sbjct: 142 ELATATQVQGDYMPITRGEKRSVE 165
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 516 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 617
+T+D K FKAY LR R + +G R KR +A
Sbjct: 169 VTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 97.5 bits (232), Expect = 9e-21
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +2
Query: 20 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRC 199
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRPIV+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 200 PTVRYHTKVRAGRGFTLREL 259
T++Y+ K RAGRGFTL EL
Sbjct: 61 QTLKYNMKSRAGRGFTLEEL 80
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/84 (48%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Frame = +1
Query: 262 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 438
AAG+ +A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+L++FP + +KV G++ E
Sbjct: 82 AAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAE 141
Query: 439 ERKLATQLRGPLMPVQQPAPKSVE 510
E ATQ++G MP+ + +SVE
Sbjct: 142 ELATATQVQGDYMPIARGEKRSVE 165
>07_03_1556 + 27692770-27694119
Length = 449
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 333 RLVASTGIYSNPNRSGKYWVQSCGPN-SRRVNPLPARTLVWYRTVGHRTIGRNG 175
R + +T + +NP+RS Y+V G ++V +PA L + G T+ +G
Sbjct: 275 RRIKTTPLLANPHRSSLYYVNMTGIRVGKKVVSIPASALAFDPATGAGTVLDSG 328
>10_08_0620 - 19321612-19323237
Length = 541
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Frame = +1
Query: 262 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKG--KKVLKGEANE 435
A +P +R D +RR+ V L I R AR L P+G K + +
Sbjct: 4 AVAASPAQSRKTETYTDTKRRD-DVRGLNIAAGRAVAAAARTSLGPRGMDKMISSSSSGG 62
Query: 436 EERKLATQLRGPL---MPVQQPAPKSVEDLS 519
++ + T + MP+ QPA + + DLS
Sbjct: 63 DQAVIITNDGATILSRMPLLQPAARMLADLS 93
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 334 VESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQL 462
++SL+ VQR+ E R R +L P G ++E R A +
Sbjct: 182 IQSLRTRVQRVSERRLRYMLNPTGSLSSSNYIDQERRLSALNI 224
>10_08_0694 - 19929918-19930292,19930633-19930866
Length = 202
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 319 RRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQ 489
R N + + + + K LI+ P G +VL+G E++ K A ++ L +++
Sbjct: 54 RSNPVHKKIPVLLHHGKPIAESLIIIPPGIRVLRGSVEEDKDKAAGEMSTALQHLEE 110
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 313 DLQQSQSFGQILGSILRP 260
DL+ QS GQI+G +LRP
Sbjct: 54 DLKSLQSVGQIIGEVLRP 71
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 313 DLQQSQSFGQILGSILRP 260
DL+ QS GQI+G +LRP
Sbjct: 53 DLKSLQSVGQIIGEVLRP 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,840,757
Number of Sequences: 37544
Number of extensions: 361515
Number of successful extensions: 851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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