Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30496
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             109   2e-24
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   34   0.13 
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     31   0.91 
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)              28   6.4  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/78 (62%), Positives = 56/78 (71%)
 Frame = +2

Query: 26  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 205
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R               LRPIVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 206 VRYHTKVRAGRGFTLREL 259
            +Y+TKVRAGRGFTL EL
Sbjct: 64  FKYNTKVRAGRGFTLDEL 81



 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
 Frame = +1

Query: 262 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 438
           AAG+    A TIGIAVD RR+N+S ESLQ NVQR+KEY+++LI+FP K  K  +G++   
Sbjct: 83  AAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAA 142

Query: 439 ERKLATQLRGPLMPVQQ 489
           +   A QL+GP+MP+ Q
Sbjct: 143 DLANAVQLQGPVMPIPQ 159


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +1

Query: 301 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 459
           IA+  R    + +     + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 337  ESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVEDL 516
            ESL++  ++IKE +A+L+     +++ + E   +E      LR  L         S E L
Sbjct: 1124 ESLEVANKKIKELQAQLL---TARELTQQECVSKEASEVANLRDALEKANSKVAHSEEIL 1180

Query: 517  SLKMKRTSKLIN 552
            +LK  R  +L+N
Sbjct: 1181 ALKAARLKELVN 1192


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 406  KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVEDLSLKMK 531
            KK LK   N+E ++L   L+  L  VQQ + K  EDL +K++
Sbjct: 1401 KKELKSLHNKELQELQNNLKQQLAVVQQKSDKLSEDLKVKIE 1442


>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
          Length = 91

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +1

Query: 286 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 456
           AR I +A+  RR   +  S+Q   +   EY  R     KG+KV KG    +ERK A+
Sbjct: 17  ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,151
Number of Sequences: 59808
Number of extensions: 394017
Number of successful extensions: 1059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)