Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30496
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    91   7e-19
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    91   9e-19
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 41/93 (44%), Positives = 55/93 (59%)
 Frame = +2

Query: 26  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 205
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 206 VRYHTKVRAGRGFTLRELGPQD*TQYLPERLGL 304
            RY+TK R GRGF+L+EL     +Q     +G+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGI 96



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 5/95 (5%)
 Frame = +1

Query: 262 AAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEE 438
           AAG++   ARTIGIAVD RR NK+ E L+ N  R+KEY+A+LILFP K     KG+++ E
Sbjct: 83  AAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAE 142

Query: 439 ERKLATQLRGPLMPVQQ----PAPKSVEDLSLKMK 531
           E K+A QLRG ++P+        P+ V D   K++
Sbjct: 143 ELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVE 177


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 39/78 (50%), Positives = 50/78 (64%)
 Frame = +2

Query: 26  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 205
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR +VRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 206 VRYHTKVRAGRGFTLREL 259
            RY+TK R GRGF+L+EL
Sbjct: 64  KRYNTKTRLGRGFSLQEL 81


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -3

Query: 162 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 73
           RGAT A+A + I++CF+++   GW  QV+ N+
Sbjct: 9   RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40


>U41535-2|AAB63402.1|  731|Caenorhabditis elegans Hypothetical
           protein F18A1.6a protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 403 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 498
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237


>U41535-1|AAK67247.1|  734|Caenorhabditis elegans Hypothetical
           protein F18A1.6b protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 403 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 498
           GK +     NEE+R+LA  LR  +     PAP
Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,220,544
Number of Sequences: 27780
Number of extensions: 307918
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)