Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30495
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 27 2.7
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 27 3.5
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 4.7
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 4.7
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 26 4.7
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ... 26 6.1
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 26 6.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 6.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 6.1
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 25 8.1
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 8.1
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 8.1
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 8.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 8.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 238 GKRFSRSQPDPSSAGSGVSREPPAPSREPFR 146
G FS S P SS G R P P+R+ +R
Sbjct: 423 GVPFSPSMPSGSSRGGYHGRNPGGPNRQRYR 453
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 265 MKTTAAGAFGKRFSRSQPDPSSAGSGVSREPPAP 164
+ AAG F R S+ QP+P + VS E +P
Sbjct: 15 LSAAAAGTFFFRRSQKQPEPETVDEKVSFESYSP 48
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +3
Query: 297 WMRLENCKKFVKTPM-PDGLHLLTLEPWGDQILLRIENYKTGAEDSTI-EIDLQGIFNGI 470
W R+ ++ + P+ G+ L + L R+ + T D E+ +Q + + I
Sbjct: 356 WTRIYRIQRDIPMPLVSSGVETGNLR---ELALNRMRDLGTKCRDIRAREVGMQEVHHKI 412
Query: 471 HIKSVK--ETTLTANSGWTTMIS 533
H + V+ TAN GW T +S
Sbjct: 413 HPEQVELLRRDYTANGGWETFLS 435
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 697 FDIRYKRPYLLRFKF 653
+DIRYKRPY+ K+
Sbjct: 422 YDIRYKRPYVSSLKY 436
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 324 FVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDSTIEIDLQGIFNGIH 473
+V P + LE WG L +E+Y A + ++ + G++ G+H
Sbjct: 530 YVSVGSPSAPIIEFLEEWG---LETLEDYNPSASPNATKVFVNGVWLGVH 576
>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
Atp23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -3
Query: 435 WSNLRHRSCS-FRFSTGSG 382
W+NLRH++CS R S+ SG
Sbjct: 101 WNNLRHQACSEIRASSMSG 119
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 4 IYIENGERFTVLTDRSQGGTSLV 72
I IE G+RFTV S GT+LV
Sbjct: 412 IVIEKGQRFTVREGGSTVGTALV 434
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 214 PDPSSAGSGVSREPPAPSREPFRSGPHXXXXXXRAAISCAASVP 83
P P+SA S+ PP PS P + P +A S ++VP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP 195
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 512 WLDDYDKWTWNTEGDFYESFNKKYG 586
WL++ D W + D+Y+S N +YG
Sbjct: 1191 WLENSDPRVWQIKKDYYKSQN-QYG 1214
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 380 RPDPVENR--KLQDRCRRFDHRN*PAGHIQRYPYQKRKRDNANRKQWLDDYDKWTWNTEG 553
R +E+R K+QD + D I+ ++R + K+ D KW + +G
Sbjct: 289 RHTDIESRLQKMQDNAKELDESR--RKKIELLEKKERDEEQFLEKERRDTARKW--DNQG 344
Query: 554 DFYESFNKKYGSFEAVNKA 610
DF + K+ S ++V+ A
Sbjct: 345 DFIRNMRKEIYSGDSVSLA 363
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 294 QWMRLENCKKFVKTPMPDGLHLLTLEPWGDQILL 395
+++ L+ +KF+ + MP GL + GD ++L
Sbjct: 293 RFLELDVTEKFLSSAMPPGLRFPAVNILGDNLIL 326
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +1
Query: 85 ELMLHRRLLHDD---AFGVGEALNETVLGSGLVVRGKHRI 195
EL++H R+LH++ F + E N + S LV + R+
Sbjct: 479 ELLIHERILHEEKNLKFALSELSNSNIFDS-LVCEERERV 517
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 693 ISAINDLISFALSLILRPSSSLTSGPSTALFTASKLPYFLL 571
+S I +I F SL + PSS + S A +P+ L+
Sbjct: 457 LSWIGYVICFVFSLNIEPSSKIVKPVSVVKRVAFNIPFLLI 497
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 244 HLPPWSSFPTPQASATSNG*GWRIARSLSRP 336
H PPW++ T +S+TS+ W S + P
Sbjct: 405 HPPPWAAASTSVSSSTSSPAPWAKPASSAAP 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,360
Number of Sequences: 5004
Number of extensions: 60860
Number of successful extensions: 210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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