Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30495
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 77 2e-14
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 56 3e-08
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 41 0.001
10_08_0127 - 15010125-15011068,15011328-15011835 31 0.91
01_06_0025 - 25716563-25718332 31 0.91
05_01_0245 - 1829921-1830359,1830449-1831002,1832016-1832144,183... 30 1.6
09_02_0468 - 9608922-9610061 29 3.7
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 3.7
12_02_1257 - 27372420-27372724,27373486-27373662,27373862-27373886 29 4.8
11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413 29 4.8
06_03_0169 - 17457929-17457988,17458086-17458192,17458383-174584... 29 4.8
04_04_0550 - 26187347-26188828 29 4.8
05_01_0530 - 4567481-4569043 28 6.4
10_06_0145 + 11215895-11216860 28 8.5
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 28 8.5
02_02_0054 - 6398829-6399047,6399470-6399676,6399858-6400557,640... 28 8.5
01_05_0427 + 22057201-22057478,22057601-22057793 28 8.5
01_05_0426 + 22042215-22042595,22044846-22045688 28 8.5
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/67 (56%), Positives = 49/67 (73%), Gaps = 5/67 (7%)
Frame = +1
Query: 4 IYIENGER-FTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNETVL----GSG 168
IY+E+G R ++L DRS GG S+ +G++ELMLHRRLLHDD GV EALNET G
Sbjct: 749 IYVEDGSRELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNETTCFDNQCEG 808
Query: 169 LVVRGKH 189
LV++GK+
Sbjct: 809 LVIQGKY 815
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +1
Query: 4 IYIENGE-RFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNETV 156
IY+ +G+ +VL D + G +S+ +G++E+MLHRRL DD GVGE LNE V
Sbjct: 741 IYVADGKYELSVLVDHAVGASSIQDGQIEVMLHRRLSADDGRGVGEPLNEVV 792
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 19 GERFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEAL 144
G RF+V + +S G SL G +E+ML RRL DD G+G+ +
Sbjct: 936 GNRFSVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQGV 977
>10_08_0127 - 15010125-15011068,15011328-15011835
Length = 483
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 259 TTAAGAFGKRFSRSQPDPSSAGSG-VSREPPAPSREPFRSGPHXXXXXXRAAISCAASVP 83
T A G F K+ + + P P A S P PS P RS P R I AS+P
Sbjct: 153 TRAHGRFCKKSAAAPPPPFEASSSRFLATPRTPSSPPLRSTPPPFREMNRIGIGAGASLP 212
>01_06_0025 - 25716563-25718332
Length = 589
Score = 31.1 bits (67), Expect = 0.91
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 311 ELQEVCQDPDA*---RAPSAHPGALGRPDPVEN 400
+ Q+V +PD R PSA PGA +P PVEN
Sbjct: 327 QAQQVTSNPDLITIKRRPSAAPGAARKPQPVEN 359
>05_01_0245 -
1829921-1830359,1830449-1831002,1832016-1832144,
1832249-1832339,1832646-1832758,1832836-1833079,
1833193-1833281,1833357-1833424,1833790-1833874,
1834038-1834190
Length = 654
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 185 NTGSCARRIRLRSRKAFSKCTCRRGLHFQRLRPQLRAM 298
N G C + I + + F + CR H + RP++RA+
Sbjct: 207 NGGKCLQSILPATLEEFQRLRCRVAFHALKFRPEIRAL 244
>09_02_0468 - 9608922-9610061
Length = 379
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 226 SRSQPDPSSAGSGVSREPPAPSREPFRSGP 137
SR QP PSS G+ + PP P+ P R+ P
Sbjct: 22 SRQQPRPSS-GTAPAPPPPTPADRPPRASP 50
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -1
Query: 419 TGLVVFDSQQDLVAPRLQGEQM---EPVRHRGLDKLLAILQPHPLLVAEA*GVGNEDHGG 249
+GL F APRL+ +M P R+ G + + +L P PLL A GG
Sbjct: 758 SGLAPFPLAAGASAPRLRLRRMLPPAPTRNPGACRFIPLLPPKPLLSPAA--AAASSRGG 815
Query: 248 RCI 240
C+
Sbjct: 816 LCV 818
>12_02_1257 - 27372420-27372724,27373486-27373662,27373862-27373886
Length = 168
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 224 RKAFSKCTCRRGLHFQRLRPQLRAMDE 304
+KAF +C ++G+H R +P L +++
Sbjct: 122 KKAFQECVAQQGIHVSRCQPYLDMLND 148
>11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413
Length = 451
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 464 RYPYQKRKRDNANRKQWLDDYDKWTWNTEGDFYESFNKKYGSFEAV 601
R P + +K+D NRK +D ++ +W+ G + + K + +A+
Sbjct: 100 REPSKTKKKDEPNRKVVVDGVEEGSWSATGSVVQIHSTKETNRKAI 145
>06_03_0169 -
17457929-17457988,17458086-17458192,17458383-17458499,
17458630-17458702
Length = 118
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 247 GAFGKRFSRSQPDPSSAGSGVSREPPAPSREPFRSGPH 134
G F K +P+P ++ S ++ P P P SGP+
Sbjct: 52 GGFEKSLMFPEPEPDASPSWLAARRPTPEGAPVPSGPN 89
>04_04_0550 - 26187347-26188828
Length = 493
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 316 ARSLSRPRCLTGSICSPWSLGATR 387
AR RP C+ +C W+LG R
Sbjct: 118 ARPRRRPSCIIAGMCHTWALGVAR 141
>05_01_0530 - 4567481-4569043
Length = 520
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 331 RPRCLTGSICSPWSLGATR 387
RP C+ CSPW+ G R
Sbjct: 119 RPDCVVADSCSPWTAGVAR 137
>10_06_0145 + 11215895-11216860
Length = 321
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 259 TTAAGAFGKRFSRSQPDPSSAGSGVSREPPAPSREP 152
TT A A + S P P+S+ + PPAP P
Sbjct: 247 TTTADAADVSSTGSSPSPTSSNQAATATPPAPRPPP 282
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -2
Query: 280 PEALEMKTTAAGAFGKRFSRSQPDPSSAGSGVSREPPAPSREPFRSGP 137
P + + TT+A A + P AG G S PP P +GP
Sbjct: 139 PPSSAVATTSAAAAAALMAPMMLQPLDAGGGASAPPPPIRGIPIYNGP 186
>02_02_0054 -
6398829-6399047,6399470-6399676,6399858-6400557,
6400927-6401120
Length = 439
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 521 DYDKWTWNTEGDFYESFNKKYGSFEAVNKAVDGPDV 628
++ W W ++GD + + S A+N+ V G D+
Sbjct: 377 EWKNWAWRSDGDLFMNGAYFQASNGAINRKVKGSDM 412
>01_05_0427 + 22057201-22057478,22057601-22057793
Length = 156
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 275 GVGNEDHGGRCIW-KTLFAISTGSFERRIRCFPRTTSPEP 159
G+ N DHGGR +W T + ++ E R+ +P+P
Sbjct: 43 GLNNIDHGGRQVWADTRYGVADAEHE-RVHAETFALAPQP 81
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 275 GVGNEDHGGRCIW-KTLFAISTGSFER 198
G+ + DHGGR +W T + I+ G ER
Sbjct: 248 GLNDIDHGGRQVWADTRYGIAGGEHER 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,715,060
Number of Sequences: 37544
Number of extensions: 479965
Number of successful extensions: 1873
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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