Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30495
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             74   1e-13
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              74   1e-13
SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)        33   0.17 
SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32)                  33   0.23 
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_13056| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 28   6.5  
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
 Frame = +1

Query: 4   IYIENGER-FTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNET-VLGSGLVV 177
           I++++  R  T+LTDRS GG+SL +G VELMLHRRLL DD  GV E LNE+ + G GL+V
Sbjct: 705 IFVKDSNRQLTLLTDRSLGGSSLKDGSVELMLHRRLLVDDKRGVDEPLNESGISGKGLIV 764

Query: 178 RGKHRIL 198
           RGK  ++
Sbjct: 765 RGKVNVV 771



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
 Frame = +3

Query: 255  VVFISNASGLSYEQWM-RLENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDS 431
            V F  N S  + E+W+ +  +    V   +P  +H+LTLE      L+R+E+     EDS
Sbjct: 795  VSFAQNPS--TVEKWLAKYNSLYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDS 852

Query: 432  ----TIEIDLQGIFNGIHIKSVKETTLTAN 509
                 + + LQG+F  + +  V+E  L AN
Sbjct: 853  KLSMPVNVSLQGLFTDLEVSKVEELNLAAN 882


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 38/67 (56%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
 Frame = +1

Query: 4   IYIENGER-FTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNET-VLGSGLVV 177
           I++++  R  T+LTDRS GG+SL +G VELMLHRRLL DD  GV E LNE+ + G GL+V
Sbjct: 693 IFVKDSNRQLTLLTDRSLGGSSLKDGSVELMLHRRLLVDDKRGVDEPLNESGISGKGLIV 752

Query: 178 RGKHRIL 198
           RGK  ++
Sbjct: 753 RGKVNVV 759



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
 Frame = +3

Query: 255  VVFISNASGLSYEQWM-RLENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDS 431
            V F  N S  + E+W+ +  +    V   +P  +H+LTLE      L+R+E+     EDS
Sbjct: 783  VSFAQNPS--TVEKWLAKYNSLYTGVARQLPSNVHMLTLETSNQYALIRLEHQFEADEDS 840

Query: 432  ----TIEIDLQGIFNGIHIKSVKETTLTAN 509
                 + + LQG+F  + +  V+E  L AN
Sbjct: 841  KLSMPVNVSLQGLFTDLEVSKVEELNLAAN 870


>SB_41673| Best HMM Match : Glyco_hydro_38 (HMM E-Value=2.3e-24)
          Length = 687

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 13  ENGERFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNE 150
           ++  R ++L+ +  G   L  G +E+++ RRLL DD  G+G+ + +
Sbjct: 621 DSNHRLSLLSAQPNGVAGLQTGMLEVVMDRRLLQDDNRGLGQGVTD 666


>SB_33863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 597

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +1

Query: 13  ENGERFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNE 150
           ++  R ++L+ +  G   L  G +E+++ RRLL DD  G+G+ + +
Sbjct: 6   DSNHRLSLLSAQPNGVAGLQTGMLEVVMDRRLLQDDNRGLGQGVTD 51


>SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32)
          Length = 651

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 271 LEMKTTAAGAFGKRFSRSQPDPSSAGSGVSREPPAPSREPFRSGP 137
           LE+K TA G+ G    RS  DP +    +S  P     +P RSGP
Sbjct: 147 LEIKRTARGS-GNHIRRSGMDPKNVPLTLSSGPDVMREDPIRSGP 190


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +2

Query: 536 TWNTEGDFYE----SFNKKYGSFEAVNKAVDGPDVREDEGLKIKLKAKEIRSFIADIE 697
           T+NT+G+  E    SFNKK  S    + ++D P  + +  L+ K   KE +   ++I+
Sbjct: 245 TFNTKGEISERKEESFNKKTNSSSQTDLSIDTPPDKRELKLEYKESVKERQRLQSEID 302


>SB_13056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +3

Query: 309 ENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAEDSTIEIDLQGIFNGIHIKSVK 488
           +  K+F+K   PD   L TLE        R+E  ++  ED T+E  L+GI + IHI    
Sbjct: 122 DQMKRFLKADSPDEYPLKTLEK-------RLE--ESCKEDETLESLLEGITSLIHILDKA 172

Query: 489 ETTLTANSGWT 521
           + +     G T
Sbjct: 173 DESAKEQGGST 183


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -1

Query: 482  AFDMDTVEYALQVNFDGRIFGTGLVVFDSQQDLVAPRLQGEQME-PVRHRGLDKLLAILQ 306
            A + + ++ ALQ NF GR  GTG +     + L   ++ GE+   PV+    D L     
Sbjct: 2374 ADECNAIQVALQRNFGGRSLGTGKIQSVFLEKLKKHQVVGEETSLPVKDLIRDNLYDKTA 2433

Query: 305  PHPLLV 288
             H +++
Sbjct: 2434 RHLMVI 2439


>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 370  SRVSRWSPSGIGVLTNFLQFSNLIHC 293
            S + RWSPS + VL+N+    N  HC
Sbjct: 1317 SFIFRWSPSDVLVLSNY-SLGNAAHC 1341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,636,471
Number of Sequences: 59808
Number of extensions: 488988
Number of successful extensions: 2052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2048
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)