Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30495
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si... 69 2e-12
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si... 69 2e-12
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si... 65 5e-11
At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein si... 57 1e-08
At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein si... 45 4e-05
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 32 0.33
At3g24880.1 68416.m03120 expressed protein 29 2.3
At3g24870.1 68416.m03119 expressed protein 29 2.3
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 29 3.1
At3g61420.1 68416.m06879 transcription factor-related low simila... 28 5.3
At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR... 28 5.3
At1g55750.1 68414.m06383 transcription factor-related low simila... 28 5.3
At1g28030.1 68414.m03432 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.3
At5g48900.1 68418.m06049 pectate lyase family protein similar to... 28 7.1
At3g56080.1 68416.m06233 dehydration-responsive protein-related ... 28 7.1
At1g61850.1 68414.m06979 patatin family protein similar to membr... 28 7.1
At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote... 27 9.3
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 27 9.3
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 27 9.3
At1g49270.1 68414.m05524 protein kinase family protein contains ... 27 9.3
>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase GI:1419374 from [Homo
sapiens]
Length = 1024
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/67 (52%), Positives = 52/67 (77%), Gaps = 5/67 (7%)
Frame = +1
Query: 4 IYIENGER-FTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNETVL----GSG 168
IY+++ ++ F+V+ DR+ GG+S+V+G+VELMLHRRLL DD+ GV E LNETV +G
Sbjct: 775 IYLQDSKKEFSVMVDRAFGGSSIVDGQVELMLHRRLLLDDSRGVAENLNETVCVQDKCTG 834
Query: 169 LVVRGKH 189
L ++GK+
Sbjct: 835 LTIQGKY 841
>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase GI:1419374 from [Homo
sapiens]
Length = 921
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/67 (52%), Positives = 52/67 (77%), Gaps = 5/67 (7%)
Frame = +1
Query: 4 IYIENGER-FTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNETVL----GSG 168
IY+++ ++ F+V+ DR+ GG+S+V+G+VELMLHRRLL DD+ GV E LNETV +G
Sbjct: 775 IYLQDSKKEFSVMVDRAFGGSSIVDGQVELMLHRRLLLDDSRGVAENLNETVCVQDKCTG 834
Query: 169 LVVRGKH 189
L ++GK+
Sbjct: 835 LTIQGKY 841
>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase GI:3522867 from
[Homo sapiens]
Length = 1019
Score = 64.9 bits (151), Expect = 5e-11
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Frame = +1
Query: 4 IYIENG-ERFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNETVL----GSG 168
IY+++ +VL DR+ GG+SL G++ELMLHRR+ HDD GVGE LNETV G
Sbjct: 772 IYMQDKTSELSVLVDRAVGGSSLENGQIELMLHRRMQHDDIRGVGEILNETVCLPEGCKG 831
Query: 169 LVVRGK 186
L ++GK
Sbjct: 832 LTIQGK 837
>At5g66150.1 68418.m08333 glycosyl hydrolase family 38 protein similar
to lysosomal alpha-mannosidase SP:O09159 from [Mus
musculus]
Length = 1047
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/73 (43%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Frame = +1
Query: 4 IYIENGE-RFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEALNETV----LGSG 168
+YI++ + +VL DR+ GG S+ +GE+ELMLHRR DD+ GV E+L ETV +G
Sbjct: 803 MYIKDEKAELSVLVDRATGGASIKDGEIELMLHRRTSMDDSRGVEESLVETVCVNDTCAG 862
Query: 169 LVVRGKHRILRSK 207
L +RG + + +K
Sbjct: 863 LTIRGNYYVSINK 875
>At5g14950.1 68418.m01754 glycosyl hydrolase family 38 protein similar
to alpha-mannosidase II SP:P27046 from [Mus musculus]
Length = 1173
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +1
Query: 16 NGERFTVLTDRSQGGTSLVEGEVELMLHRRLLHDDAFGVGEAL 144
NG+RF+V + +S G SL EG +E+ML RRL+ DD G+G+ +
Sbjct: 932 NGQRFSVHSRQSLGVASLKEGWLEIMLDRRLVRDDGRGLGQGV 974
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1)
(p125Nap1) (Membrane-associated protein HEM-2)
(Swiss-Prot:P55161) [Rattus norvegicus]
Length = 1339
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 234 FPNAPAAVVFISNASGLSYEQWMRLENCKKFVKTPMPDG--LHLLTLEPWGDQILLRIEN 407
FPN P +S + + ++LE KF + DG LHL +LEPW Q+LL +
Sbjct: 109 FPNHPRICTLLSKKFPEHFSK-LQLERIDKFSLDSLHDGAELHLQSLEPW-IQLLLDLMA 166
Query: 408 YKTGA 422
++ A
Sbjct: 167 FREQA 171
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 181 GKHRILRSKDPVEIAKSVFQMHLPPWSSFPTPQASATSN 297
G H + K ++ ++ F M +P S P+P AS SN
Sbjct: 979 GPHSAKKQKTTKQLVENNFDMAIPHTGSIPSPAASQMSN 1017
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 181 GKHRILRSKDPVEIAKSVFQMHLPPWSSFPTPQASATSN 297
G H + K ++ ++ F M +P S P+P AS SN
Sbjct: 974 GPHSAKKQKTTKQLVENNFDMAIPHTGSIPSPAASQMSN 1012
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 255 VVFISNASGLSYEQWMRLENCKKFVKTPMPDGLHLLTLEPWGDQILLRIENYKTGAED-- 428
V IS A+ L +++ + +FV DG +T+E GD L + +++ G E+
Sbjct: 11 VRLISLATKLGFDEDSAKKCLDRFVDLYGDDGRDFITVELCGDDFLAALADFEEGTEEWD 70
Query: 429 --STIEIDLQG 455
IE + QG
Sbjct: 71 DIQAIESEAQG 81
>At3g61420.1 68416.m06879 transcription factor-related low
similarity to SP|Q9DBA9 TFIIH basal transcription factor
complex p62 subunit {Mus musculus}; contains Pfam
profile PF03909: BSD domain
Length = 566
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 545 TEGDFYESFNKKYGSFEAVNKAVDGPDVREDEGLKIKLKAKEI 673
TE DF+ + + + N AV + EDE L + LK EI
Sbjct: 197 TEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEI 239
>At3g51560.1 68416.m05646 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1253
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 266 NEDHGGRCI--WKTLFAISTGSFERRIRCFPRTTSPE 162
N G RC+ WKT + TG E+ RC+ +PE
Sbjct: 1107 NAGLGVRCVSRWKTKKRVVTGKAEKVFRCWAPREAPE 1143
>At1g55750.1 68414.m06383 transcription factor-related low
similarity to SP|Q9DBA9 TFIIH basal transcription factor
complex p62 subunit {Mus musculus}; contains Pfam
profile PF03909: BSD domain
Length = 591
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 545 TEGDFYESFNKKYGSFEAVNKAVDGPDVREDEGLKIKLKAKEI 673
TE DF+ + + + N AV + EDE L + LK EI
Sbjct: 227 TEKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEI 269
>At1g28030.1 68414.m03432 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GS-AOP loci [GI:16118889,
GI:16118887, GI:16118891, GI:16118893]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +2
Query: 542 NTEGD--FYESFNKKYGSFEAVNKAVDGPDVREDEGLK-IKLKAKEIRSFI 685
NTE FY ++ + + N AVDG +++ +G + IK+K + SFI
Sbjct: 182 NTENKIGFYPHIDRHFLTILCQNDAVDGLEIKTKDGEEWIKVKPSQASSFI 232
>At5g48900.1 68418.m06049 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa];
non-consensus AG donor splice site at exon 2
Length = 417
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 464 RYPYQKRKRDNANRKQWLDDYDKWTWNTEGDFY 562
R+ + KRD A + QW W W +EGD +
Sbjct: 340 RFAKEVTKRDYAGQWQWRH----WNWRSEGDLF 368
>At3g56080.1 68416.m06233 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 357
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 338 RGLDKLLAILQPHPLLVAEA*GVGNEDHGGRCIWKTLFAIST 213
R L +L +L+P V A V D G R +WKT+ +++T
Sbjct: 58 RPLLELNRVLRPGGFFVWSATPVYQHDEGHRNVWKTMESLTT 99
>At1g61850.1 68414.m06979 patatin family protein similar to
membrane-associated calcium-independent phospholipase A2
gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
Patatin domain PF01734, PF00514:
Armadillo/beta-catenin-like repeat
Length = 1265
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 323 LLAILQPHPLLVAEA*GVGNEDHGG 249
++A+ PH +V E G+G++D GG
Sbjct: 42 MVALPAPHDTVVVELKGIGDDDEGG 66
>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1135
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 182 GNTGSCARRIRLRSRKAFSKCTCRRGLHFQRLR 280
GN G C++ R S+ T +RG+H RLR
Sbjct: 691 GNNGLCSKGFRSCFVSNSSQLTTQRGVHSHRLR 723
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -2
Query: 580 FLVEAFVKVSFRIPSPLIIVVQPLFAVSVVSFTLLIWIPLNMPCRSISMVESSAPVL*FS 401
F+V + + + RI L + P +A+ V+ L+ PL+ S+S AP++
Sbjct: 12 FIVLSLIFLIGRIKRKLNLPPSPAWALPVIGHLRLLKPPLHRVFLSVSQSLGDAPIISLR 71
Query: 400 ILNRI 386
+ NR+
Sbjct: 72 LGNRL 76
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 476 QKRKRDNANRKQWLDDYDKWTWNTEGDFYESFNKKYGSFEAVNKAVDGPDVREDE 640
Q++K ++ NR +D D T +E DF+++ +K FE++ V+ E E
Sbjct: 201 QEKKHNSDNR---FNDEDTETVRSEYDFFDTRKQKQKQFESMRNQVEEETETERE 252
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 226 SRSQPDPSSAGSGVSREPPAPSREP 152
S S P P S S S+ PP PS P
Sbjct: 76 SSSSPPPPSDSSSQSQSPPPPSTSP 100
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,442
Number of Sequences: 28952
Number of extensions: 344620
Number of successful extensions: 1290
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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