Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30494
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18) 44 2e-04
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 29 5.2
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 29 5.2
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 28 6.9
SB_9178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_17151| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18)
Length = 244
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/64 (37%), Positives = 32/64 (50%)
Frame = +2
Query: 257 PEDEEGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSL 436
PE + IER+ LV LI D V +G+ D+++LGG G Y +AGV L
Sbjct: 85 PEQIDSIERSCSLVRQLINDLVTSGIRKDRIVLGGCDMGAQIAMHVAYRYLPDVAGVFGL 144
Query: 437 SCWL 448
S L
Sbjct: 145 STHL 148
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 511 HGDKDPVVSFKWGQMTASCLKTFMKNVKFSTYQGLAHSSSIAELKDMQEFIEKTLP 678
HG D V+ KW TA + Y G H S+ ++ ++E+I KTLP
Sbjct: 177 HGHDDKRVNLKWAAHTAEYFMDLNVETELQVYYGQNHELSVHQVNHLKEWIIKTLP 232
>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +2
Query: 41 SSNNRRTG*TYSIAYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGF-DYARDAQQR 208
S NN R G Y +T W +H C C+ + Y D RD +R
Sbjct: 46 SQNNNRGGHNVGNLYYYTGSHVQVQWANQHSCGDMNNECELVLQYMCGDLVRDGTRR 102
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +2
Query: 41 SSNNRRTG*TYSIAYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGF-DYARDAQQR 208
S NN R G Y +T W +H C C+ + Y D RD +R
Sbjct: 510 SQNNNRGGHNVGNLYYYTGSHVQVQWANQHSCGDMNNECELVLQYMCGDLVRDGTRR 566
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 557 RHHASRHL*KMLNFQHTKDSHIAHPLPNSKTC 652
RHH+S ++++ QHT P PNS+ C
Sbjct: 167 RHHSSPQTQQLMDNQHTPHFVFPVPSPNSRIC 198
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 384 ANAPP*EKPPSRTLSAGTPALTSSAINPWTRSVALSIPSSSSG 256
+ AP P S + A P S++ NP T S S PS+ SG
Sbjct: 582 SGAPASNGPTSGSTGANQPTSGSTSANPTTSSATGSQPSTPSG 624
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 447 SQQDRDMTPANLSGYVSAAYRANAPP*EKPPSRTLSAGTPALTSSAI---NPWTRSVALS 277
SQ PA+ GY + A+A + T TPA S A+ +P+T S ++
Sbjct: 132 SQPQTSSVPASQGGYYAQGAAASAKAVYQSTGATGYGTTPASVSPAVAKSHPYTSSSTVA 191
Query: 276 IPSSS 262
P SS
Sbjct: 192 YPYSS 196
>SB_9178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 311 QSTHGRDQWLSQYLLHLQECSVQRS*IKPRGHTETVVERHGHSRSRRTYNFD-MRASDAS 135
Q +GR Q Q +L Q S +R + + T+T ++++R + D MRA + S
Sbjct: 50 QQDYGRYQQRRQKILDWQARSRERGSLAKQNFTDTDYALKNYNQTRPKQSLDTMRAPELS 109
Query: 134 NRACPSMT 111
+ PS T
Sbjct: 110 DYYIPSKT 117
>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 126 STIAGIRGPHVKVICPTASTMPVTLNNGFR 215
+ + G R PH + P+TLNNGF+
Sbjct: 544 AALRGFRNPHDMHVFNYGGAAPLTLNNGFQ 573
>SB_17151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +3
Query: 48 IIAAQARHTASLIFLHGLGDTGHGWASTIAGIRGPHVKVICPTASTMPVTLNNGFRMPSW 227
++ A A H + FL+ +G T W + HV I T+P ++ F +P
Sbjct: 50 VLDATATHV-NFKFLYKVGATTFHWPRR-EDVTKVHVSTIFYCPMTVPSFISGPFAIPEL 107
Query: 228 FDLRTLDATLLKMKKV 275
D+ L + + KKV
Sbjct: 108 SDVEKLFKIVSRFKKV 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,231,983
Number of Sequences: 59808
Number of extensions: 543960
Number of successful extensions: 1293
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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