Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30492
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 27 3.3
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 27 4.3
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 5.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 5.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 7.6
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 26 7.6
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 7.6
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 26 7.6
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 445 GAGVEFRPNDLRVVLCRGGSDAVATRAR 528
G VE +PND V+ G D +A R+R
Sbjct: 46 GGNVEHKPNDALFVIDTLGDDRIAKRSR 73
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 714 PTHTQMVPAVPTQLSAGGPFQT 779
P+HT + ++P S GPF+T
Sbjct: 126 PSHTSSLDSIPGYASGSGPFKT 147
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 381 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETGYL 253
LKE ++DN P ++ ++ Y N +G E ++ F G L
Sbjct: 76 LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNGLL 118
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 256 VSSLVSEVRNGFRFAVSVRV-TVASTHSNNNVRLVVVVESLLQLTS 390
V SL ++ + R A V TVA +N+ RL VV++SLL + S
Sbjct: 1288 VDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLS 1333
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +3
Query: 696 RPLAAVPTHT---QMVPAVPTQLSAGGP 770
R + VP H M P +PTQ AGGP
Sbjct: 498 RGMPMVPGHNGPMPMYPGMPTQFPAGGP 525
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 226 RPEE*IHPEQVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLLQLTSFATHD 405
RPE ++ SSL+ +VR V T+SN + R+ V+ + L +F HD
Sbjct: 52 RPERQSRLQRSSSLIEQVRGNEDGENDVLNQTRETNSNFDNRVGVI--ECIHLVNFMCHD 109
Query: 406 AV 411
++
Sbjct: 110 SL 111
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/38 (26%), Positives = 17/38 (44%)
Frame = +2
Query: 626 NAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTC 739
+ VC R C ++ + L + +C + DGTC
Sbjct: 417 SGVCTSASRQCKKLTNFSSLSCHSDSCKVSCQNEDGTC 454
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -2
Query: 790 VTDVVWKGPPAESCVGT-AGTICVW 719
VT V+W G + VGT +G I +W
Sbjct: 169 VTSVLWTGKGTQLAVGTDSGVIYIW 193
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 7.6
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = -3
Query: 570 RTKTIKNEIDHRCSSRPCG-YRIAAPPTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRS 394
+T I + S P G + + PT + + +F A GA N + ++
Sbjct: 57 KTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAAL--GA---NLNLKHALIVG 111
Query: 393 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 283
+++++D +PHV+VA G + ETI
Sbjct: 112 GMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,929
Number of Sequences: 5004
Number of extensions: 64408
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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