Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30492
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.65
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 31 1.5
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 2.0
07_03_0318 - 16721615-16722154 30 2.0
02_01_0775 + 5775949-5777385 29 3.5
07_03_1191 + 24690936-24691029,24691184-24691377 29 4.6
02_04_0500 + 23500769-23500951,23501200-23501285,23501442-235014... 29 4.6
11_01_0483 - 3718104-3718802,3718817-3719308 29 6.0
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573... 29 6.0
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913 29 6.0
06_01_0684 + 5008881-5009504 28 8.0
01_07_0058 + 40799547-40799810,40799942-40799978,40800279-408003... 28 8.0
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 28 8.0
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 632 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 760
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 634 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQAVLSRPHRS--LRTLTL 807
+PP PL+P +PSS+ H LQ + L +HS A +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 808 LPNS 819
+PN+
Sbjct: 239 MPNA 242
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 632 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 733
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>07_03_0318 - 16721615-16722154
Length = 179
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -2
Query: 832 APAPMNLAAESMSLVTDVVWKGPPAESCVGTAGTICVWVGTAASGRTSA 686
APAP A + L T P A GTA + GTAA+ T+A
Sbjct: 106 APAPAGTADKVAPLGTPAPAVSPAAAGTAGTAASAVATAGTAAAAGTAA 154
>02_01_0775 + 5775949-5777385
Length = 478
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -1
Query: 719 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGARQQRTPRRS 576
GG +W Q RV G GC G + CGA P+ S
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGAPMVAVPQWS 394
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 632 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 742
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_04_0500 +
23500769-23500951,23501200-23501285,23501442-23501490,
23501560-23501746,23502214-23502371,23502447-23502515,
23502692-23502750,23503140-23503176,23503493-23503564,
23503694-23503841,23504124-23504219,23505042-23505181,
23505304-23505419,23505614-23505659,23505747-23505923
Length = 540
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +3
Query: 441 HRGWRRIQTERS*GSPL*GGQRCGSHKGESYNDDQFH 551
H GW R+ E+ G L + + GE +N+ Q +
Sbjct: 171 HSGWTRVIVEKPFGKDLESAEELSAQLGELFNEQQLY 207
>11_01_0483 - 3718104-3718802,3718817-3719308
Length = 396
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 321 YSYTNTDGKPETITYFADETGYLLRVNLFLRSPPPRAKL 205
YS +N+ G T +G+L+RV+L L SPP + L
Sbjct: 51 YSTSNSGGAKITGAASRSSSGHLVRVSLRLESPPAASGL 89
>10_02_0137 -
5730778-5730873,5732137-5732334,5732413-5732625,
5732748-5732870,5733726-5733841,5734530-5734897,
5735498-5735649,5736557-5736715,5737773-5737946
Length = 532
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/111 (19%), Positives = 43/111 (38%)
Frame = -3
Query: 684 SCRRWQTWLQGRSVWRQTAFCFYKVRRATTKNTEKEQERTKTIKNEIDHRCSSRPCGYRI 505
S ++ W+ + AF + T TEKE R K KN + S +
Sbjct: 189 SATGYERWMMKAATNGPAAFGSDVKKLEPTNGTEKENARPKKGKNNEEGNNSDKGEEDEE 248
Query: 504 AAPPTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNK 352
++ + + D +G + +F+ + I + + E +E DD++
Sbjct: 249 EEAARKNRLALNKKSMDDDEEGGKDLDFDLDDEIEKGDDWEHEETFTDDDE 299
>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
Length = 213
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 660 LQGRSVWRQTAFCFYKVRRATTKNTEKEQERTKTIKNEIDH 538
L+ S W+ A CF + E+++E+ + IK+ DH
Sbjct: 150 LEDDSQWQAPAHCFPAAAADEDEEEEEDEEQDEMIKSSYDH 190
>06_01_0684 + 5008881-5009504
Length = 207
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 832 APAPMNLAAESMSLVTDVVWKGPPAESCVGTAGTICVWVGTAASGRTSAE 683
AP P+ +AA S+ + + PP S TAG+ +W TA + E
Sbjct: 145 APPPVQVAAGSLDW-SQFMANPPPMYSPTATAGSQAMWPVTAPAAEADGE 193
>01_07_0058 +
40799547-40799810,40799942-40799978,40800279-40800362,
40800563-40800615
Length = 145
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 814 LAAESMSLVTDVVWKGPPAESCVGTAGTICVW 719
++A S+SLV + P E C G GT CV+
Sbjct: 76 VSAVSLSLVLGLKGDPVPCERCAGNGGTKCVF 107
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 714 PTHTQMVPAVPTQLSAGGPFQTTSVTKDIDSAAKFIGAGA 833
PT T+M+ + Q+SA FQT TK D K IG A
Sbjct: 359 PTITEMLRGLTFQISANSFFQTN--TKQADVLYKLIGESA 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,409,526
Number of Sequences: 37544
Number of extensions: 512283
Number of successful extensions: 1503
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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