Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30492
         (833 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)                     32   0.50 
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)               31   0.87 
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)               30   2.0  
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   3.5  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_5010| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)                  29   4.6  
SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)                 29   6.1  
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)                 29   6.1  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_31605| Best HMM Match : ResIII (HMM E-Value=0.44)                   28   8.1  
SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)            28   8.1  
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)                    28   8.1  
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 744

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
 Frame = +3

Query: 684 SALVRPLAAVPTHTQMVPAVPT--QLSAGGPFQTTSVTKDIDSAAKFIGAGA 833
           +A +RP +       +VPA P    L++ G FQT+S  +D+DSAAKFIGAGA
Sbjct: 61  TAAIRPQSQALVKA-VVPASPLLGALASRG-FQTSSAVQDVDSAAKFIGAGA 110


>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 720

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -1

Query: 815 FGSRVNVLSDRCGLERTACRE-----LCRDSRYHLCMGGYCCKWSHQ-CRVAEDGRPGC 657
           +GS      + C L+R AC       L    R H C G  C    +  C+V +DG+P C
Sbjct: 159 YGSDGKNYDNECELKRAACTSNRRIILAGRGRVHPCAGFSCDSPPYSTCKVQDDGKPAC 217



 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -1

Query: 815 FGSRVNVLSDRCGLERTACRE-----LCRDSRYHLCMGGYCCKWSHQ-CRVAEDGRPGC 657
           +GS      + C L+R AC       L    R H C G  C    +  C+V +DG+P C
Sbjct: 532 YGSDGKNYDNECELKRAACTTNKRIILAGRGRVHPCAGFSCDSPPYSTCKVQDDGKPSC 590


>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 1568

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -1

Query: 815  FGSRVNVLSDRCGLERTACRE-----LCRDSRYHLCMGGYCCKWSHQ-CRVAEDGRPGC 657
            +GS      + C L+R AC       L    R H C G  C    +  C+V +DG+P C
Sbjct: 1385 YGSDGKNYDNECELKRAACTTNKRIILAGRGRVHPCAGFSCDSPPYSTCKVQDDGKPSC 1443



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -1

Query: 815 FGSRVNVLSDRCGLERTACRE-----LCRDSRYHLCMGGYCCKWSHQ-CRVAEDGRPGC 657
           +GS      + C L+R AC       L    R H C G  C    +  C+V ++G+P C
Sbjct: 451 YGSDGKNYDNECELKRAACTSNRRIILAGRGRVHPCAGFNCDSPPYSTCKVQDNGKPAC 509


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -1

Query: 815 FGSRVNVLSDRCGLERTACRE-----LCRDSRYHLCMGGYCCKWSHQ-CRVAEDGRPGC 657
           +GS      + C L+R AC       L    R H C G  C    +  C+V +DG+P C
Sbjct: 233 YGSDGKNYDNECELKRAACTTNKRIILAGRGRVHPCAGFSCDSPPYSTCKVQDDGKPAC 291


>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
          Length = 565

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 818 EFGSRVNVLSDRCGLERTACR-ELCRDSRYHLCMGG 714
           E   R NVLSD  GLE  +CR  LC +  +  C  G
Sbjct: 76  EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111


>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 516 GYRIAAPPTEDYPKIVRSEFDASPDGAY 433
           G R   PPT+DY +  RS+ D S DG Y
Sbjct: 11  GKRPPEPPTKDYDRRSRSQDDDSDDGCY 38


>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
          Length = 488

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 465 SEFDASPDGAYNYNFETSNGIVRSETGE 382
           +E DA PDG+YN++ ++   +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242


>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 351 PHVIVAVRGSYSYTNTDGKPETITYFADETGYLLRVNLFLRSPPP 217
           P V+  +  +Y+ +N +   ++ TY   +TG +     F   PPP
Sbjct: 844 PTVLNYINNAYANSNNESDTDSETYINPDTGEITHFATFFPPPPP 888


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 827 STNEFGSRVNVLS-DRCGLERTACRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 651
           ST E  +R+ ++S D+C  +R  CR+ C+ S   + MG  C + + + ++A    P C G
Sbjct: 8   STQEKLTRIAIVSTDKCKPKR--CRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +3

Query: 699 PLAAVPTHTQMVPAVPTQLSAGGPFQTTSVTKDIDSAAKFIG 824
           P +AVPT     P V   LSA  P  +TS +  I SA    G
Sbjct: 570 PSSAVPTPATAPPPVAATLSAPPPLDSTSGSSTISSATICFG 611


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 779 GLERTACRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 630
           G +R    E CR   +  C    C +++HQC   E+G  P      S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414


>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -3

Query: 519 CGYRIAAPPTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVI 340
           C +    P T D       E D+     YNY+    NG+  S+ G+L      DN  HV+
Sbjct: 48  CDFNKDVPDTSDNNGY--QEPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVL 104

Query: 339 VA 334
            A
Sbjct: 105 NA 106


>SB_5010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 555 KNEIDHRCSSRPCGYRIAAPPTEDYPKIVRSEFDASP 445
           KN +   C+ +   YR   P TED  K  R E  A P
Sbjct: 2   KNRMPLECTCQVTAYRYRRPTTEDCHKTPRGEATAEP 38


>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
          Length = 599

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -3

Query: 450 SPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVR-GSYSYTNTDGKPETITYF 274
           SP G Y    E +  I R E  +L       +K H ++AVR G Y   + D    T+T+ 
Sbjct: 94  SPSGHYYKVCEPNFFIGRDENLDLTLKSRSVDKKHAVIAVRDGRYELYDMDSLNGTVTHS 153

Query: 273 A---DETGYLLRVNL 238
           A   +E   LL  NL
Sbjct: 154 ALNSNENHQLLLSNL 168


>SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)
          Length = 557

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 627 FCFYKVRRATTKNTEKEQERT-KTIKNEIDHRCSSRPCGYRIAAPPTED 484
           FC+YK+ R +++  +K ++R   T ++  D+  SS   G+  +  P  D
Sbjct: 238 FCYYKIFRTSSQQAKKFRKRVMPTFESTNDNTNSSNVRGHHRSGIPNRD 286


>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
          Length = 1851

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 690 LVRPLAAVPTHTQMVPAVPTQLSAGGPFQTTSVTKDIDSAA 812
           LVRPL   P      P  P   ++G P +T    K+  S A
Sbjct: 28  LVRPLETTPAPAPTTPTSPATPASGAPIRTPIPLKETPSPA 68


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = -1

Query: 773  ERTACRELCRDSRYHLCMGGYCCKWSHQC---RVAEDG--RPGCRGDQSG 639
            + + C   C    Y  C+ G C KW   C   +  EDG   PG  G Q G
Sbjct: 1185 DESRCDHKCSKDEYQ-CVSGACVKWPLTCDGKKDCEDGTDEPGICGVQIG 1233


>SB_31605| Best HMM Match : ResIII (HMM E-Value=0.44)
          Length = 488

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 522 PCGYRIAAPPTEDYPKIVRS-EFDASPDGAYNY 427
           PC   I   P E+YP++  +  FD  P  A+ Y
Sbjct: 339 PCSVAIGRAPQENYPQLPATIRFDPDPSVAHRY 371


>SB_45475| Best HMM Match : RhoGAP (HMM E-Value=1.26117e-44)
          Length = 552

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 561 TIKNEIDHRCSSRPCGYRIAAPP 493
           ++++ ID+  S  PC YRI  PP
Sbjct: 514 SVRSRIDNNESMTPCKYRIGTPP 536


>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
          Length = 201

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 758 RELCRDSRYHLCMGGYCCKWSHQCR 684
           R  CR    HLC+G   C+W  Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197


>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 460 IRRQPRWSLQLQFRDFQRHRA*RNW*AEGGSRRRQ 356
           +RR+  WS+Q++  +  RH   + W   GG ++R+
Sbjct: 3   VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,147,452
Number of Sequences: 59808
Number of extensions: 572366
Number of successful extensions: 1864
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)