Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30492
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69280.1 68414.m07943 expressed protein                             28   6.6  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   8.8  

>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
 Frame = +2

Query: 632 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCRRSFPDHIGH*GH*LCC 811
           +C +   PC   C L         C          CCP  + CR    D+    G   CC
Sbjct: 303 LCCKNTGPCFSCCRLPSCGYNFFCCKRLK------CCPCFSWCRWPSCDYNSSCGWLFCC 356

Query: 812 QIHW-CW 829
             HW CW
Sbjct: 357 --HWSCW 361


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 613 LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQQYPPI 723
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,066
Number of Sequences: 28952
Number of extensions: 369644
Number of successful extensions: 1111
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)