Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30491
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.4  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.5  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    22   4.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.5  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 469 AEQNGCSVRGDPFIS 425
           A  NGC +RG  F+S
Sbjct: 212 ANPNGCQIRGTFFVS 226


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 469 AEQNGCSVRGDPFIS 425
           A  NGC +RG  F+S
Sbjct: 219 ANPNGCQIRGTFFVS 233


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 232 KESHNRQLSDSRTSFRYSCNCCSMRLKIFSAL 327
           K   N  +      +RYSC  CS   K   +L
Sbjct: 271 KSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 302


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 232 KESHNRQLSDSRTSFRYSCNCCSMRLKIFSAL 327
           K   N  +      +RYSC  CS   K   +L
Sbjct: 29  KSMLNSHMKSHSNVYRYSCRDCSYATKYCHSL 60


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 61  LREHGAVHHLVR 96
           LRE G +HHL R
Sbjct: 360 LREEGWIHHLAR 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,831
Number of Sequences: 336
Number of extensions: 4001
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)