Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30491
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   2.1  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   2.1  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.8  
SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    26   5.0  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    25   8.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   8.7  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 589 DMLGPEQGYEGLYGTRPSFHQQGYDQIPIDSMQGLE 696
           D++ P   Y+G    + + + +GYD +P  S +G E
Sbjct: 664 DLIQPSYNYDGEKRRKENDNHEGYDLLPNSSTKGEE 699


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 535 RDDHQMWSNDLPIQSDIQDMLGPEQGYEGLYGTRPSFHQQ 654
           R+D+    ND   +S ++  +     YE  Y +R S+HQ+
Sbjct: 5   RNDYHYDGNDHQYRSPLKSNVDQNSFYESSYRSRQSYHQR 44


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 514 ELTNSLFRDDHQMWSNDLPIQSDIQDMLGPEQGYEGLYGTRPSFHQQGYDQIP 672
           E   S+FRD    +SN L  QS   +M   +   +G     P F +Q    IP
Sbjct: 245 EKQQSIFRDISPTYSNRLHSQSHWWNMFLSQLSLDGTKDLGPKFLEQSILSIP 297


>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 461 LFRMSEDKPHDYKKRLLWN*LIRCSATI 544
           L  M +D  H++ K ++WN   +   TI
Sbjct: 174 LLEMDDDDEHEFSKSIVWNYFEQAETTI 201


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 466 PHVRRQAPRLQEETPMELTNSLFRDDH 546
           PH+  +  RL EET ++  N+ FR D+
Sbjct: 266 PHIASKLLRLPEETFVKFLNASFRLDY 292


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 386 GFDHFCSFFLYGQFTEHAGGNALNIFNLIEQQL 288
           G   FCS    G++   AGG+ L+++   + QL
Sbjct: 225 GIPLFCSIQYQGKYIMCAGGSFLSVYTTPDMQL 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,927
Number of Sequences: 5004
Number of extensions: 65316
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)