Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30491
(746 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31372| Best HMM Match : Arm (HMM E-Value=0) 72 4e-13
SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13) 32 0.57
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41) 30 1.7
SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63) 29 4.0
SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3) 29 5.3
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0) 29 5.3
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36) 29 5.3
SB_49935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37) 28 7.0
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.0
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27) 28 9.2
SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8) 28 9.2
>SB_31372| Best HMM Match : Arm (HMM E-Value=0)
Length = 656
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/39 (84%), Positives = 35/39 (89%)
Frame = +2
Query: 392 ATAPLTELLHSRNEGVATYAAAVLFRMSEDKPHDYKKRL 508
AT PLT+LLHSRNEG+A YAAAVLFRMSEDK DYKKRL
Sbjct: 537 ATQPLTDLLHSRNEGIAAYAAAVLFRMSEDKSQDYKKRL 575
Score = 67.7 bits (158), Expect = 9e-12
Identities = 37/68 (54%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Frame = +3
Query: 213 SLAYFSQRKPQQTTIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMIEAEG 392
+L ++ + IR + I +FVQLL++ ENIQRVAAGVLCELA +KEGAE IEAE
Sbjct: 477 ALHILAREAHNRAVIRSLHCISLFVQLLYSPNENIQRVAAGVLCELAQDKEGAEAIEAEN 536
Query: 393 --QPLRSL 410
QPL L
Sbjct: 537 ATQPLTDL 544
Score = 51.2 bits (117), Expect = 9e-07
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +1
Query: 1 VKAVVGLVRNLALCSA-NYAPLREHGAVHHLVRLLMRAYND---TQRQRSSSGGGANTAY 168
V G++ NL + N + G + LVR ++A + T+ G N
Sbjct: 403 VTCAAGILSNLTCNNPRNKQLVCRFGGIEALVRTCLQAGDREEITEPADMQRRPGHNVVI 462
Query: 169 ADGVRMEEIVEGAVGALHILAKESHNR 249
DGVRM++IVEG VGALHILA+E+HNR
Sbjct: 463 -DGVRMDDIVEGTVGALHILAREAHNR 488
>SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)
Length = 771
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/66 (24%), Positives = 35/66 (53%)
Frame = +3
Query: 210 WSLAYFSQRKPQQTTIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMIEAE 389
W LA+ ++ K + + N + + +L +E +++++ AAGVL E+ ++
Sbjct: 533 WVLAFDNENK--EAILTTPNAVELLKELQHSEDDSVKKAAAGVLWEIEGKESHTVKESTA 590
Query: 390 GQPLRS 407
+PLR+
Sbjct: 591 DEPLRN 596
>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
Length = 1069
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 333 GVLCELAVEKEGAEMIEAEGQPLRSLNCCIQEMKGSPRTLQPFCSACPKTSPTITRRDSY 512
G L L +KE AE I AEG+PL S ++ + S + P P+ PT +RD +
Sbjct: 192 GGLAILKYKKEFAERIRAEGEPLHSYLSALR-LAYSRAHVPPVVETLPE-DPTDAQRDRH 249
>SB_34660| Best HMM Match : AdoHcyase_NAD (HMM E-Value=0.63)
Length = 404
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 258 RQQNVIPIFVQLLF-NEIENIQRVAAGVLCELAVEKEGAEMIEAEGQPLRSLNCCIQEMK 434
R N + +++F N + + R+A+ + L +EKE +++ AEG+ R L C++ K
Sbjct: 224 RHMNATHLQARIIFRNGLSKLTRLASKHVV-LMLEKEKSQLKNAEGEAKRRLKPCLKTAK 282
>SB_31777| Best HMM Match : Homeobox (HMM E-Value=1.3)
Length = 420
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 286 CNCCSMRLKIFSALPPACSVNW 351
CN C + +K +S LPP NW
Sbjct: 222 CNACVLLVKRWSKLPPGTEKNW 243
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 172 DGVRMEEIVEGAVGALHILA 231
DG+R ++IV+ AVGALH LA
Sbjct: 1727 DGLRGKKIVDVAVGALHCLA 1746
>SB_58882| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1027
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 62 CGNTAPFIIWCAC*CVPTTTPRDNAALRAVEPILLTLTAFVWRRSWK 202
C N APF CAC D AL V I L L+ VWR +++
Sbjct: 634 CTNRAPFFK-CACALGSKGNGTDCVALDRVYHINLRLSRTVWRENYR 679
>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
Length = 641
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 210 NGAFHDLLHTNA--VSVSSIGSTARRAALSLGVV 115
NG FH L+HTN +SIG R + +GV+
Sbjct: 502 NGMFHSLIHTNMHFFDNNSIGRILNRFSKDIGVI 535
>SB_49935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 378 IEAEGQPLRSL-NCCIQEMKGSPRTLQPFCSACPKTSPTITRRD 506
++A+ + LR + N C + +P ++Q P TSP +T++D
Sbjct: 61 VQADEEKLREMSNTCEPGLGSAPPSVQTRRKNSPHTSPNLTKKD 104
>SB_31470| Best HMM Match : SAND (HMM E-Value=5e-37)
Length = 912
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 192 LLHTNAVSVSSIGSTARRAALSLGVVVGTHQQAHQMMNGAVFPQRSVVGGTERQV 28
L H A + ++ ++ + + + G+H + Q+ AVFP RSV +ER +
Sbjct: 763 LQHAKADKMEAVADARQQQFIKVKMKRGSHGKWQQV--AAVFPVRSVTSSSERYI 815
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 469 HVRRQAPRLQEETPMELTNSLFRDDHQM 552
HVRRQA +L E T +S+ DHQ+
Sbjct: 1091 HVRRQADQLCERTAPPCQDSMSHRDHQL 1118
>SB_52639| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 359
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 265 RTSFRYSCNCCSMRLKIFSALPPACS 342
R FR +C CC + +++ L ACS
Sbjct: 309 REGFRRACGCCRRQHRVYPGLLVACS 334
>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 451 CSRSVPHVRRQAPRLQEETPMELTNSLFRDDHQMWSNDLPIQSDIQDM 594
CS VR + Q + P+ N++ DDHQ+ + + +QS + M
Sbjct: 114 CSGLKNLVRTRFTLFQTKIPLNTENAVGNDDHQIPTQEKSVQSTVLRM 161
>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
Length = 607
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 190 EIVEGAVGALHILAKESHNRQLSDSRTSFRYSCNCCS 300
++ E ++ AL L+K H++ + +R++ + NCCS
Sbjct: 541 DVAEQSLTALETLSKR-HSKSILQARSALAIASNCCS 576
>SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)
Length = 436
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -2
Query: 679 NLSVFDRSLVGERMVWSHTGPRNPALARACPVYRIVSEGHWTTSGD 542
N+ + +S+ G+RM + + PA A P+ + G+W+T +
Sbjct: 130 NVVMQGKSIDGDRMSKASSVQSKPAQANTVPLCSLQKNGYWSTQAN 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,057,984
Number of Sequences: 59808
Number of extensions: 574659
Number of successful extensions: 1928
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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