Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30491
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical pr...    38   0.010
AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.      38   0.010
AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical ...    30   2.0  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen prot...    28   6.1  
U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81564-6|CAB04572.1|  678|Caenorhabditis elegans Hypothetical
           protein K05C4.6 protein.
          Length = 678

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 1   VKAVVGLVRNLALCSANYAPLREHGAV--HHLVRLLMRAYNDTQRQRSSSGGGANTAYAD 174
           +KA +G++RN AL   N   L +      H  V L M    D  R+  ++         D
Sbjct: 436 IKAALGVIRNSALLQTNLIELTQEQTANGHTAVSLTM----DILRRAITAIEENPDIAVD 491

Query: 175 GVRMEEIVEGAVGALHILA 231
           GV M  ++EGAV ALH LA
Sbjct: 492 GVPMWGVIEGAVSALHQLA 510


>AF016853-1|AAB94552.1|  678|Caenorhabditis elegans HMP-2 protein.
          Length = 678

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 1   VKAVVGLVRNLALCSANYAPLREHGAV--HHLVRLLMRAYNDTQRQRSSSGGGANTAYAD 174
           +KA +G++RN AL   N   L +      H  V L M    D  R+  ++         D
Sbjct: 436 IKAALGVIRNSALLQTNLIELTQEQTANGHTAVSLTM----DILRRAITAIEENPDIAVD 491

Query: 175 GVRMEEIVEGAVGALHILA 231
           GV M  ++EGAV ALH LA
Sbjct: 492 GVPMWGVIEGAVSALHQLA 510


>AL161711-1|CAE17960.1|  134|Caenorhabditis elegans Hypothetical
           protein Y10G11A.3 protein.
          Length = 134

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 234 RKPQQTTIRQQNVIPIFVQLLFNEIENIQRVAAGVLCELAVEKEGAEMIEAEGQPLRSLN 413
           R+P +  +R +NVI     L F ++E  +++    L    +E E A  ++ +    R+L 
Sbjct: 37  REPPEKALRFENVIIQETNLPFEQVEESKKMLGDALQLCGIENEIASFMKRKFDAKRTLA 96

Query: 414 CC-IQEMKGSPRTLQPFCSACPK 479
            C  Q++  SP +   +   C K
Sbjct: 97  MCGWQKLWQSPGSNSIYSFYCFK 119


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -2

Query: 745 RLPLRQCPCQYQNRYRSQAPASNLSVFDRSLVGERM--VWSHTGPRNPALARACPVYRIV 572
           RL L +  C++ NR   Q  ++ L+   RSL  + +  +      + PA ++A    R+V
Sbjct: 193 RLQLEEAICEHMNRLTQQHFSTRLARIPRSLSAKELLEIVISNNVKKPATSQATNFARLV 252

Query: 571 SEGHWTTSGD 542
            +   +T+ D
Sbjct: 253 RQKRASTNDD 262


>AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen protein
           115 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +1

Query: 1   VKAVVGLVRNLALCSANYAPLREHGAVHHLVRLLMRAYNDTQRQRSSSGGG 153
           ++AV  +  +L  C+A+    + + A+  +   L++++N T  QRS  GGG
Sbjct: 45  LQAVTSVDDSLGRCTAD--AFKMYKAIDEIEIQLIQSFNKTTSQRSKRGGG 93


>U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical
           protein C27D9.1 protein.
          Length = 481

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 541 DHQMWSNDLPIQSDIQDMLGPEQGYEGLYGTRPSFHQQGYDQIPIDSMQGLEIGSGFGID 720
           DH+MWSN    +    +M   E         RP   +  ++++ +D   G EI + F   
Sbjct: 278 DHEMWSN----KRIFTEMRFDEMFVTDHNIIRPRHERDHFERVEVDMQAGDEIATCFAES 333

Query: 721 MDIGEAEG 744
           M + E  G
Sbjct: 334 MGMFEQSG 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,995,218
Number of Sequences: 27780
Number of extensions: 395786
Number of successful extensions: 1167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)