Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30491
(746 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 26 0.33
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 26 0.33
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 23 3.0
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 23 3.0
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 4.0
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 5.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.3
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 5.3
DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor pro... 21 9.3
DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor pro... 21 9.3
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 21 9.3
AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled rec... 21 9.3
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 681 RIYRYLIVALLVKGWSGPIQALVTLL 604
RI+ + + LL+ WSG +Q LV +L
Sbjct: 278 RIFNLICMMLLIGHWSGCLQFLVPML 303
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 681 RIYRYLIVALLVKGWSGPIQALVTLL 604
RI+ + + LL+ WSG +Q LV +L
Sbjct: 246 RIFNLICMMLLIGHWSGCLQFLVPML 271
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 301 MRLKIFSALPPACSVNWP 354
+R KI+ AL C V WP
Sbjct: 358 LREKIYGALEGYCRVAWP 375
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 301 MRLKIFSALPPACSVNWP 354
+R KI+ AL C V WP
Sbjct: 358 LREKIYGALEGYCRVAWP 375
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 64 REHGAVHHLVRLLMRAYNDTQRQRSSSGGGANT 162
+E+GAV LV L R YN + SG AN+
Sbjct: 1548 KEYGAVSGLVVQLQRGYNSGNNR---SGEQANS 1577
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 61 LREHGAVHHLVR 96
LRE G +HHL R
Sbjct: 364 LREEGWIHHLAR 375
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 156 GSTARRAALSLGVVVGTHQQAHQMMN 79
G RRA+L G+ T AHQ +N
Sbjct: 228 GINGRRASLFCGLQKYTRSFAHQSIN 253
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 22.2 bits (45), Expect = 5.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 156 GSTARRAALSLGVVVGTHQQAHQMMN 79
G RRA+L G+ T AHQ +N
Sbjct: 223 GINGRRASLFCGLQKYTRSFAHQSIN 248
>DQ863218-1|ABI94394.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 153 STARRAALSLGVVVG 109
S RRAA +LGV++G
Sbjct: 320 SKERRAARTLGVIMG 334
>DQ863217-1|ABI94393.1| 399|Apis mellifera tyramine receptor
protein.
Length = 399
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 153 STARRAALSLGVVVG 109
S RRAA +LGV++G
Sbjct: 320 SKERRAARTLGVIMG 334
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 21.4 bits (43), Expect = 9.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 395 TAPLTELLHSRNEGVATYAAAVLFRMSEDKP 487
T+P T L S A AAAV + + P
Sbjct: 32 TSPATASLESSLSAAAVAAAAVNYAQQHNSP 62
>AJ245824-1|CAB76374.1| 399|Apis mellifera G-protein coupled
receptor protein.
Length = 399
Score = 21.4 bits (43), Expect = 9.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 153 STARRAALSLGVVVG 109
S RRAA +LGV++G
Sbjct: 320 SKERRAARTLGVIMG 334
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,888
Number of Sequences: 438
Number of extensions: 4924
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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