Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30490
         (819 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6MSU3 Cluster: Conserved hypothetical transmembrane pr...    36   0.93 
UniRef50_Q55EI8 Cluster: Filamin/ABP280 repeat-containing protei...    36   1.2  
UniRef50_Q7UEX2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  

>UniRef50_Q6MSU3 Cluster: Conserved hypothetical transmembrane
           protein; n=1; Mycoplasma mycoides subsp. mycoides
           SC|Rep: Conserved hypothetical transmembrane protein -
           Mycoplasma mycoides subsp. mycoides SC
          Length = 872

 Score = 36.3 bits (80), Expect = 0.93
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 244 VTLYSVASLKNYYYEQ*FFFKKSTKFVYFIYATLFNLHTRARRYELLLVTVPI 86
           + L  +  + N Y E   F +K  KF+Y I   LF+ H R + ++ ++  VP+
Sbjct: 237 IKLKEINFILNSYIEAKIFKRKPVKFIYIINNGLFSPHIRTKFFDFIIPIVPV 289


>UniRef50_Q55EI8 Cluster: Filamin/ABP280 repeat-containing protein;
           n=1; Dictyostelium discoideum AX4|Rep: Filamin/ABP280
           repeat-containing protein - Dictyostelium discoideum AX4
          Length = 1385

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 271 W*DNLFEYVVTLYSVASLKNYYYEQ*FFFKKSTKFVYFIYATLFNL 134
           W  N   Y+++  +  +LK Y YE    FK+ T +V+F+  T+ N+
Sbjct: 542 WESNTINYIISNNNEINLKQYGYEFNQIFKEETDYVFFLSLTISNM 587


>UniRef50_Q7UEX2 Cluster: Putative uncharacterized protein; n=1;
           Pirellula sp.|Rep: Putative uncharacterized protein -
           Rhodopirellula baltica
          Length = 392

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -2

Query: 719 QSRVTTTMLPGRCIKIYNNFYNILLLIYVCSV 624
           + RVTTT+LP R +++   F + L+L+ VCSV
Sbjct: 95  KDRVTTTLLPRRSVRL--QFVSALMLVMVCSV 124


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,577,667
Number of Sequences: 1657284
Number of extensions: 13677035
Number of successful extensions: 25967
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25954
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)