Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30490
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    30   2.5  
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473...    29   4.4  

>04_04_0965 -
           29762388-29762564,29764272-29766361,29766567-29767170,
           29768395-29768637,29768704-29770203
          Length = 1537

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 634 CALYSHTHITPTHLHETHGSMGII 563
           CAL SH+   P HL E HGS+ ++
Sbjct: 825 CALDSHSPAVPLHLVELHGSLCMV 848


>07_01_0633 -
           4735298-4735485,4736083-4736114,4736203-4736297,
           4736414-4736487,4736682-4736817,4736902-4736965,
           4737101-4737166,4737265-4737446,4737824-4737948,
           4738031-4738169,4738250-4738369,4738675-4738746,
           4738900-4738935,4739633-4739749,4739821-4739953,
           4740053-4740156,4740243-4740370,4740880-4741010,
           4741561-4741757,4743906-4744583
          Length = 938

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 157 IYATLFNLHTRARRYELLLVTVP-IN*Y*MTIWKILKYRYNLLS 29
           I A L N+HTRA + +LL+V +P +N Y   I ++ +    ++S
Sbjct: 590 IEAALSNIHTRAPQLQLLIVILPDVNGYYGRIKRVCETELGIVS 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,579,180
Number of Sequences: 37544
Number of extensions: 345524
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)