Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30490
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 205 SSNSLNWQHCKVSQRIQINYLTKSKLPIAAPL 300
           ++N+ N  + K  Q   INY+ +  +P+  P+
Sbjct: 98  NNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 205 SSNSLNWQHCKVSQRIQINYLTKSKLPIAAPL 300
           ++N+ N  + K  Q   INY+ +  +P+  P+
Sbjct: 98  NNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 205 SSNSLNWQHCKVSQRIQINYLTKSKLPIAAPL 300
           ++N+ N  + K  Q   INY+ +  +P+  P+
Sbjct: 98  NNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 205 SSNSLNWQHCKVSQRIQINYLTKSKLPIAAPL 300
           ++N+ N  + K  Q   INY+ +  +P+  P+
Sbjct: 98  NNNNYNNNNYKKLQYYNINYIEQIPIPVPVPI 129


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 625 YSHTHITPTHLHETHGS 575
           +SH H TP H H +H +
Sbjct: 423 HSHIHATPHH-HHSHAA 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,805
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)