Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30490
         (819 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31050.1 68415.m03788 plastocyanin-like domain-containing pro...    29   4.9  
At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...    28   6.5  
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea...    28   8.6  
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea...    28   8.6  

>At2g31050.1 68415.m03788 plastocyanin-like domain-containing
           protein contains plastocyanin-like domain Pfam:PF02298
          Length = 200

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 229 HCKVSQRIQINYLTKSKLPIAAPL 300
           HC + Q++QI+ L  S  P+AAP+
Sbjct: 114 HCDMGQKLQIHVLPASLGPVAAPV 137


>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -2

Query: 755 IYFANTPRLTS*QSRVTTT---MLPGRCIK-IYNNFYNILLLIYVCSVLAHPHYSYPFT* 588
           I F NTP L S  + VT     +L G+  + +Y     +LL +         +Y  PFT 
Sbjct: 132 IPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQGMEYYQAPFTI 191

Query: 587 NTRIYGNHFCLVPIF 543
           +  IYG+ F L   F
Sbjct: 192 SDSIYGSTFFLATGF 206


>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 860

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 358 IHELTSSTATGLCTSTCWELTELLWEVY 275
           +H L  S  T L  S+ W+ T  LW+V+
Sbjct: 480 VHGLMFSPLTQLLASSSWDYTVRLWDVF 507


>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 900

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 358 IHELTSSTATGLCTSTCWELTELLWEVY 275
           +H L  S  T L  S+ W+ T  LW+V+
Sbjct: 520 VHGLMFSPLTQLLASSSWDYTVRLWDVF 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,010
Number of Sequences: 28952
Number of extensions: 300968
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)