Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30489
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog prote...    29   1.8  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog (hedg...    29   1.8  
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    29   3.2  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical p...    28   4.2  
AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical...    28   4.2  
AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical...    28   4.2  
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    28   5.5  

>AF139520-1|AAD33830.1|  176|Caenorhabditis elegans warthog protein
           WRT-5 protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 204 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 94
           PS H+ +YA C  ++ + +C  +  W    T+ S GS
Sbjct: 48  PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 2    QERTKTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRHR 178
            Q   K +KN++ +R SSR  G  H+ P + R LP D     R+  R + Q +F+  +  R
Sbjct: 2525 QLERKFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSKR 2583


>AF000298-2|AAC48258.1|  176|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 5, isoform a protein.
          Length = 176

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 204 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 94
           PS H+ +YA C  ++ + +C  +  W    T+ S GS
Sbjct: 48  PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
 Frame = +3

Query: 108 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGATVTR---TLT 278
           +R++ DA+ D +     +  N  ++     LK + D+ ++    V      +++   T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607

Query: 279 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 392
              A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
 Frame = +3

Query: 108 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGATVTR---TLT 278
           +R++ DA+ D +     +  N  ++     LK + D+ ++    V      +++   T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607

Query: 279 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 392
              A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
 Frame = +3

Query: 108 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGATVTR---TLT 278
           +R++ DA+ D +     +  N  ++     LK + D+ ++    V      +++   T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607

Query: 279 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 392
              A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
 Frame = +3

Query: 108 VRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGATVTR---TLT 278
           +R++ DA+ D +     +  N  ++     LK + D+ ++    V      +++   T+T
Sbjct: 548 LRTQLDAAKDDSARRKRDAINQEIKELRITLKSSEDELHRYRKEVDTLRRQISQNSQTVT 607

Query: 279 ---ANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 392
              A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 608 LQRAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical
           protein F49E12.9a protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 437 WMFATQSCIKASLLKSIQGI*KFSSWRRRPEE*IHPE 327
           W+  T S  +    KSI+G   + SW  +P + IHPE
Sbjct: 232 WIHGTDSTFR----KSIEGKRNYMSWSMKPIKQIHPE 264


>AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1b protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 153 NFETSNGIVRSETGELKEALDDDNKPHVIVAVRGATVTRTLTANL 287
           NF + NG+    +G+    +  D K  +I AVRGA +    +A L
Sbjct: 174 NFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGARLKHFSSALL 218


>AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1a protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 153 NFETSNGIVRSETGELKEALDDDNKPHVIVAVRGATVTRTLTANL 287
           NF + NG+    +G+    +  D K  +I AVRGA +    +A L
Sbjct: 176 NFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGARLKHFSSALL 220


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 219 DNKPHVIVAVRGATVTRTLTANLKPLRTSLTRLDTML 329
           +N  + ++   G++ TR     LKPL   LT +DT++
Sbjct: 21  NNIKYGVICDAGSSGTRLFVYTLKPLSGGLTNIDTLI 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,503,285
Number of Sequences: 27780
Number of extensions: 208936
Number of successful extensions: 627
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)