Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30489
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    38   5e-05
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 38.3 bits (85), Expect = 5e-05
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 254 SYSYTNTDGKPETITYFADETGYHAQGESIP 346
           S SYT  DG+  +ITY ADE G+  QG  IP
Sbjct: 74  SDSYTAPDGQQVSITYVADENGFQVQGSHIP 104



 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = +3

Query: 105 IVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVI 239
           I   + + + DG Y  NFETSNGI   E+G+ K+    DN+  V+
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGISHQESGQPKQV---DNETPVV 70


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 162 TSNGIVRSETGELKEAL 212
           TS G  R  TGE+KEA+
Sbjct: 403 TSKGEYRMSTGEMKEAI 419


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 RLVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGV 123
           RL  +  +L     FA+H+ VGS  + V  +  AG+
Sbjct: 460 RLKAIRATLKASPFFASHEVVGSSLLFVHDTKNAGI 495


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 RLVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGV 123
           RL  +  +L     FA+H+ VGS  + V  +  AG+
Sbjct: 375 RLKAIRATLKASPFFASHEVVGSSLLFVHDTKNAGI 410


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 230 RLVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGV 123
           RL  +  +L     FA+H+ VGS  + V  +  AG+
Sbjct: 694 RLKAIRATLKASPFFASHEVVGSSLLFVHDTKNAGI 729


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 ANLKPLRTSLTRLDTMLRVNLFLRS 353
           A ++P   + T    ++RVNLF+RS
Sbjct: 45  ARIRPSGENATDGPAIVRVNLFVRS 69


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 279 ANLKPLRTSLTRLDTMLRVNLFLRS 353
           A ++P   + T    ++RVN+F+RS
Sbjct: 45  ARIRPSGENATDGPAVVRVNIFVRS 69


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 5/18 (27%), Positives = 14/18 (77%)
 Frame = +1

Query: 142 LTTTISRLPTASCVAKLV 195
           +T ++  +PT +C+A+++
Sbjct: 385 ITESLRLIPTTTCIARIL 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,294
Number of Sequences: 438
Number of extensions: 2726
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)