Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30488
         (306 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   2.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   3.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   6.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   6.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   6.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   6.7  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 218 SEGLQQFLLLGGNTFLAALACL 153
           SE ++QFL     TF+A LA L
Sbjct: 461 SEMVKQFLFTQKFTFVAGLATL 482


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 211 PSLEKTKPRLPLRSN 255
           PSL  T+P LP   N
Sbjct: 27  PSLSDTRPMLPYPQN 41


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 176 FLAALACLLYFIAAGLSLVAK 114
           F++   CLL+F++    L+ K
Sbjct: 301 FVSVWKCLLFFVSVLFILLVK 321


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 176 FLAALACLLYFIAAGLSLVAK 114
           F++   CLL+F++    L+ K
Sbjct: 301 FVSVWKCLLFFVSVLFILLVK 321


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 176 FLAALACLLYFIAAGLSLVAK 114
           F++   CLL+F++    L+ K
Sbjct: 301 FVSVWKCLLFFVSVLFILLVK 321


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 176 FLAALACLLYFIAAGLSLVAK 114
           F++   CLL+F++    L+ K
Sbjct: 301 FVSVWKCLLFFVSVLFILLVK 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,956
Number of Sequences: 336
Number of extensions: 787
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5518292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)