Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30488
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 61 3e-11
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 61 3e-11
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 27 0.47
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 0.82
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 3.3
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 3.3
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 25 3.3
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 3.3
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 4.4
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 24 5.8
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 23 7.7
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 61.3 bits (142), Expect = 3e-11
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = +3
Query: 3 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 118 HLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 61.3 bits (142), Expect = 3e-11
Identities = 25/41 (60%), Positives = 34/41 (82%)
Frame = +3
Query: 3 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 118 HLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 27.5 bits (58), Expect = 0.47
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -2
Query: 263 NVVLLLSGKR--GFVFSSEGLQQFLLLGGNTFLAA 165
N++LL S + G VFS + L +F+ GGN F+ A
Sbjct: 71 NLILLSSQSKSLGPVFSPKSLLEFVQSGGNLFVVA 105
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 0.82
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -2
Query: 200 FLLLGGNT-----FLAALACLLYFIAAGL 129
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 3.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 170 AALACLLYFIAAGLSLVAKHLRPGLLSLLP 81
A L CLL IAA L+ H+ P L LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 24.6 bits (51), Expect = 3.3
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 131 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 21
LSL K + + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 3.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 254 LLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLY 147
+L +GK ++ GL + LL GG +F + CL +
Sbjct: 70 ILNNGKAYWLAMLVGLLECLLSGGKSFAKVINCLRF 105
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 24.6 bits (51), Expect = 3.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 160 ASAARNVLPPRRRNCCRPSLEKTKPRLPLRSNTT 261
+S A+N L +R+ + L K +PR P S +T
Sbjct: 1453 SSPAKNELFVPKRSSVKSDLAKVRPRYPKGSEST 1486
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 4.4
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 91 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRC 2
AF LW+YS+ L+L + W++C
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKC 367
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 23.8 bits (49), Expect = 5.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 163 SAARNVLPPRRRNCCRPSLEKTKPRL 240
+A N+ R NC R LE + PRL
Sbjct: 552 TAVSNIEVARFENCVRKFLENSVPRL 577
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 160 ASAARNVLPPRRRNCCRPSLEKTKPRLPLRSNT 258
+++ +++ PPR R PS + + P+RS T
Sbjct: 195 STSGKHLTPPRYRPNFSPSRKAENVKSPVRSTT 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,554
Number of Sequences: 5004
Number of extensions: 12150
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -