Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30488
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 72 8e-14
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 72 8e-14
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.044
03_02_0050 + 5272471-5274861 30 0.31
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 28 1.3
05_03_0557 - 15441039-15442730 28 1.7
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 27 2.2
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 27 2.2
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 27 3.8
01_06_0102 - 26447286-26448107,26448248-26448385,26448990-264493... 27 3.8
01_03_0120 + 12717221-12717665,12718539-12718724,12719482-127195... 26 5.1
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199... 26 6.7
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311 26 6.7
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 26 6.7
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 25 8.9
04_03_1013 - 21714804-21714896,21715202-21715241,21715629-217156... 25 8.9
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 72.1 bits (169), Expect = 8e-14
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = +3
Query: 3 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 118 HMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 72.1 bits (169), Expect = 8e-14
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = +3
Query: 3 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 118 HMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.044
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 24 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 0.31
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 197 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 39
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 160 ASAARNVLPPRRRNCCRPSLEKTKPRLPLRSNTT 261
A+AA +PPRRR RP L P PL S+TT
Sbjct: 451 AAAAAAGMPPRRRRRVRPPL---PPSPPLLSSTT 481
>05_03_0557 - 15441039-15442730
Length = 563
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 272 IVYNVVLLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLYFIAA 135
IV+ +L S F+ SS G+++ GG T L AL YF AA
Sbjct: 408 IVFGSLLGTSPVTAFIESSTGIRE----GGRTGLTALTAAAYFAAA 449
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 272 IVYNVVLLLSGKRGFVFSSEGLQQFLLLGGNTFLAALAC 156
+V ++V LLS + FV +G ++ +LL N+ AL C
Sbjct: 148 MVLDLVRLLSAEENFVTVLDGNEELVLLSRNSRRLALQC 186
>02_03_0297 -
17408902-17409045,17409134-17409304,17410563-17410664,
17412605-17412718,17413095-17413178,17413669-17413808,
17414429-17414560,17415430-17415618,17415736-17415801,
17415905-17415938
Length = 391
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 171 RGACVPPLLYCGGP 130
+GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 151 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSN 255
RRH A + +PP+ R R SL K K R N
Sbjct: 439 RRHNVIACSGVPPKVRKAMRISLNKVKQRTKAAKN 473
>01_06_0102 -
26447286-26448107,26448248-26448385,26448990-26449359,
26449505-26449606,26449696-26449788,26449934-26450181,
26451088-26451274,26451825-26452043,26452464-26452660,
26453545-26453875,26454099-26454457,26455141-26455240,
26455349-26455464,26455547-26455663,26455782-26455880,
26456057-26456131,26456205-26456286,26457724-26457763,
26458685-26458769,26458924-26459055
Length = 1303
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 167 ALACLLYFI-AAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLH 24
A++CL+ F+ AAG + GLL L D +H+ ++ I+L+ H
Sbjct: 125 AISCLMTFMSAAGEVHLVSGGSDGLLILWSADHIHDSRELVPKISLKAH 173
>01_03_0120 +
12717221-12717665,12718539-12718724,12719482-12719585,
12720096-12720620
Length = 419
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 209 LQQFLLLGGNTFLAALACLLY 147
LQ +++LGG T + LACL Y
Sbjct: 21 LQYYVVLGGVTAVVLLACLRY 41
>12_01_1021 -
10419383-10419529,10419684-10419733,10419821-10419938,
10420498-10420540,10420674-10420825,10420876-10420965,
10422881-10423013,10424397-10424515
Length = 283
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 106 VLAFSAFFLWMYSMSTRLFLN 44
VL + AFF W +S ++FLN
Sbjct: 15 VLGWVAFFAWSFSFYPQVFLN 35
>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
Length = 901
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 233 GFVFSSEGLQQFLLLGGNTFLAAL-ACLLY 147
GFVFS +G++ LLL L CLLY
Sbjct: 390 GFVFSQQGIRDILLLSYYDLPINLKTCLLY 419
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 198 PPSWRQYVPRGACVPPLLYCGGPQPG 121
PP +P GA PP +Y PQPG
Sbjct: 117 PPGVPHVMPPGAVRPPAMY--APQPG 140
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 133 PAAIK*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSN 255
P + R H A PPR + SL P +P+ +N
Sbjct: 559 PFTVSKRAHIKAESEKTPPRPAHSPNNSLHNLPPLIPISTN 599
>04_03_1013 -
21714804-21714896,21715202-21715241,21715629-21715691,
21716381-21716484,21717085-21717187,21717647-21717717,
21718830-21718925,21719174-21719305
Length = 233
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 24 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
++ + N+ +N RVL+ HR + E RT+ S +
Sbjct: 143 VQTRRNLVENDRVLLNPAHRAQQEYERTEKCSSR 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,353,031
Number of Sequences: 37544
Number of extensions: 107081
Number of successful extensions: 334
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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