Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30488
(306 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 2e-18
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3) 28 1.3
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 28 1.7
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0) 27 3.0
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0) 27 3.0
SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_51144| Best HMM Match : Sugar_tr (HMM E-Value=0.13) 26 7.0
SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59) 25 9.2
SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59) 25 9.2
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.2
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33) 25 9.2
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.2
SB_13623| Best HMM Match : rve (HMM E-Value=0.00044) 25 9.2
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 87.8 bits (208), Expect = 2e-18
Identities = 42/78 (53%), Positives = 51/78 (65%)
Frame = +3
Query: 3 HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXX 182
H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ
Sbjct: 146 HMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRM 205
Query: 183 XXXXXXLLQTFAREDEAA 236
+L +A+E+EAA
Sbjct: 206 EQKRKDMLSAYAKEEEAA 223
>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
Length = 248
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -2
Query: 200 FLLLGGNTFLAALAC 156
F L+GG TFLAALAC
Sbjct: 70 FALMGGLTFLAALAC 84
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 184 PPRRRNCCRPSLEKTKPRLPL 246
PP +N +P ++KTKP PL
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPL 219
>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 30 AKGNVFKNKRVLMEYIHRKK 89
AK NV KNKR+ ++ + RKK
Sbjct: 61 AKANVKKNKRIALQALKRKK 80
>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 30 AKGNVFKNKRVLMEYIHRKK 89
AK NV KNKR+ ++ + RKK
Sbjct: 61 AKANVKKNKRIALQALKRKK 80
>SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 197 LLLGGNTFLAALACLLYFIAAGLS 126
+LLG TFL+A+ CLL +AA +S
Sbjct: 526 VLLGPRTFLSAI-CLLLALAASIS 548
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -2
Query: 269 VYNVVLLLSGKRGFVFSSEGLQQFLLLGGNTFLAALAC 156
VYN V++L G+R + E Q++L+ + L A+AC
Sbjct: 3335 VYNYVMMLRGQRNLMVQVE--DQYVLI-HDVLLEAIAC 3369
>SB_51144| Best HMM Match : Sugar_tr (HMM E-Value=0.13)
Length = 371
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 200 FLLLGGNTFLAALAC 156
F L+ G TFLAALAC
Sbjct: 317 FALMSGLTFLAALAC 331
>SB_31759| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 100 AFSAFFLWMYSMSTRLFLNTLP 35
+F AFF W+YS+ RL +P
Sbjct: 414 SFKAFFQWLYSIILRLSDEPVP 435
>SB_19058| Best HMM Match : WD40 (HMM E-Value=0.59)
Length = 752
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 100 AFSAFFLWMYSMSTRLFLNTLP 35
+F AFF W+YS+ RL +P
Sbjct: 414 SFKAFFQWLYSIILRLSDEPVP 435
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 187 PRRRNCCRPSLEKTKPRLPLRSNT 258
P RRN + LEK K R+PL T
Sbjct: 319 PLRRNDIQGLLEKAKSRIPLLKGT 342
>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
Length = 566
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 163 SAARNVLPPRRRNCCRPSLEK 225
S AR V P R CRP+L K
Sbjct: 539 STARQVPPTTRSTSCRPALRK 559
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 163 SAARNVLPPRRRNCCRPSLEK 225
S AR V P R CRP+L K
Sbjct: 1669 STARQVPPTTRSTSCRPALRK 1689
>SB_13623| Best HMM Match : rve (HMM E-Value=0.00044)
Length = 203
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 163 SAARNVLPPRRRNCCRPSLEK 225
S AR V P R CRP+L K
Sbjct: 176 STARQVPPTTRSTSCRPALRK 196
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,834,790
Number of Sequences: 59808
Number of extensions: 99107
Number of successful extensions: 390
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 377252670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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