Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30488
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...    62   1e-10
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    30   0.28 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   0.37 
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   1.1  
Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical pr...    26   4.5  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical ...    26   4.5  
AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.      26   4.5  
Z92829-1|CAB07339.1|  161|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    26   6.0  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    25   7.9  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    25   7.9  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    25   7.9  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +3

Query: 3   HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
           HLYH LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 118 HLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 151 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPL 246
           RRHAS     +PP   NC +P+ ++T+  + L
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSL 45


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 198 PPSWRQYVPRGACVPPL 148
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 172 RNVLPPRRRNCCRPSLEKTKPRLP 243
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 209 LQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLH 66
           L+  L +GG    AA+  L YFI + LS+    L  GL + L    LH
Sbjct: 785 LRMSLTMGGWGGSAAITILFYFIFSILSVCILILMEGLSAFLHAIRLH 832


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -2

Query: 272 IVYNVVLLLSGKRGFVFSSEGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHL 108
           +++ V+L++    GF + S  +  F+++GG+TF++     +         VA H+
Sbjct: 118 VLFYVILIVWKVNGFNYVSAMI--FIIIGGSTFMSITGIYIVLTVILYMAVAHHI 170


>AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 209 LQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLH 66
           L+  L +GG    AA+  L YFI + LS+    L  GL + L    LH
Sbjct: 785 LRMSLTMGGWGGSAAITILFYFIFSILSVCILILMEGLSAFLHAIRLH 832


>AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.
          Length = 865

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 209 LQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLH 66
           L+  L +GG    AA+  L YFI + LS+    L  GL + L    LH
Sbjct: 785 LRMSLTMGGWGGSAAITILFYFIFSILSVCILILMEGLSAFLHAIRLH 832


>Z92829-1|CAB07339.1|  161|Caenorhabditis elegans Hypothetical
           protein F10A3.1 protein.
          Length = 161

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 191 LGGNTFLAALACLLYFIAAGLSL 123
           LG + +++  A + YFIAAGL+L
Sbjct: 129 LGYSAWVSVAAAVCYFIAAGLAL 151


>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 127 AWSLSIFVLAFSAFFLWMYSMSTRLF 50
           A+ + IFVLA   FFL+ +  S ++F
Sbjct: 119 AFHVLIFVLAVERFFLYFFPSSEKVF 144


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 127 AWSLSIFVLAFSAFFLWMYSMSTRLF 50
           A+ + IFVLA   FF++ +  S ++F
Sbjct: 118 AFHVLIFVLAVERFFIYFFPSSEKIF 143


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 12  HSLYMKAKGNVFKNKRVL--MEYIHRKKAEKARTK 110
           HS+  K K N  KNK VL  + +  RKK  K+R++
Sbjct: 508 HSIRSKRKAN--KNKSVLSALNFFQRKKEYKSRSE 540


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 12  HSLYMKAKGNVFKNKRVL--MEYIHRKKAEKARTK 110
           HS+  K K N  KNK VL  + +  RKK  K+R++
Sbjct: 508 HSIRSKRKAN--KNKSVLSALNFFQRKKEYKSRSE 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,908,444
Number of Sequences: 27780
Number of extensions: 76862
Number of successful extensions: 238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)