Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30488
         (306 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...    73   3e-14
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...    72   7e-14
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...    72   9e-14
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    42   8e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    29   0.82 
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    28   1.4  
At3g43740.2 68416.m04673 leucine-rich repeat family protein cont...    26   4.3  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    26   4.3  
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ...    26   5.7  
At5g08480.2 68418.m01002 VQ motif-containing protein contains PF...    25   7.6  
At3g19180.1 68416.m02435 cell division protein-related weak simi...    25   7.6  

>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 32/41 (78%), Positives = 35/41 (85%)
 Frame = +3

Query: 3   HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
           H+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 118 HMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +3

Query: 3   HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
           H+YH +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 118 HMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = +3

Query: 3   HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 125
           H+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 118 HMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +3

Query: 9   YHSLYMKAKGNVFKNKRVLMEYIHRKKAEK 98
           YH ++MK KG V+KNK VLME +H+   E+
Sbjct: 37  YHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
            pleiotropic drug resistance like protein [Nicotiana
            tabacum] GI:20522008, ABC1 protein [Nicotiana
            plumbaginifolia] GI:14331118; contains Pfam profile
            PF00005: ABC transporter
          Length = 1406

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -3

Query: 124  WSLSIFVLAFSAFFLWMYSMSTRL 53
            W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 143  IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 27
            IA  L    KHL+P L+SL+P  V H EH L    +  RL
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013


>At3g43740.2 68416.m04673 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to somatic
           embryogenesis receptor-like kinase 2 [Arabidopsis
           thaliana] gi|14573457|gb|AAK68073
          Length = 248

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 101 GLLSLLPVDVLHEHTLVLEHIT 36
           G+++LLP D L   TL + HIT
Sbjct: 101 GIITLLPFDYLKTFTLSVTHIT 122


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   LYHSLYMKAKGNVFKNKRVL 65
           +Y   Y KAKG + KN+RVL
Sbjct: 876 IYDLAYEKAKGMLLKNRRVL 895


>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 107 RPGLLSLLPVDVLHEHTLVLEH 42
           RP LL L     LHEH L L H
Sbjct: 139 RPALLVLAENSYLHEHPLQLSH 160


>At5g08480.2 68418.m01002 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 173

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 193 RRNCCRPSLEKTKPRLPLRSNTT 261
           RR C RP LE  KP L  +   T
Sbjct: 67  RRQCMRPKLEIVKPPLSFKPTGT 89


>At3g19180.1 68416.m02435 cell division protein-related weak
           similarity to cell division protein Ftn2 [Synechococcus
           sp. PCC 7942] GI:16226084
          Length = 819

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 215 EGLQQFLLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDV 72
           E L Q  L+G  + +A L C ++F     SL    +R G L  +P+ V
Sbjct: 568 EWLSQSSLIGRVSVVALLGCTVFF-----SLKLSGIRSGRLQSMPISV 610


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,692,423
Number of Sequences: 28952
Number of extensions: 73257
Number of successful extensions: 238
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 311361520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)