Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30487
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    28   1.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   3.7  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.9  

>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/20 (50%), Positives = 18/20 (90%)
 Frame = +2

Query: 560 RIIPSILLRTFIYITIIACP 619
           R+IPS+++ +F+YIT++ CP
Sbjct: 148 RLIPSLVI-SFLYITLVYCP 166


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 702 PYLIITWILHANQIILV 652
           P+ IITW++H   ++LV
Sbjct: 644 PFTIITWLMHPTHLLLV 660


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 556 KSNNTVHIIADVYLHNNHCLPVQSTGNKVFGWYQNN 663
           +S   V    DVY     C+P++  G +  GW  N+
Sbjct: 149 ESGEWVIYSGDVYSAETTCIPIELVGLRYRGWKTND 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,368
Number of Sequences: 5004
Number of extensions: 59222
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)