Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30487
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939...    29   5.1  
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77...    29   5.1  

>04_04_1427 +
           33491847-33491888,33493504-33493623,33493740-33493976,
           33494754-33495638,33495733-33495837,33495920-33496064,
           33496146-33496310,33496391-33496629,33496724-33496756,
           33496840-33496921,33497017-33497177,33497282-33497455,
           33497549-33497731,33497832-33498019,33498155-33498251
          Length = 951

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 315 IYVLGSLTVSCIYILMKNY*LYIKSITYNKIWNCLLL 425
           + +   LT  CI+  MKNY +Y  SIT   +   LL+
Sbjct: 627 VIISAVLTSRCIFQRMKNYTIYAVSITIRIVLGFLLI 663


>01_01_0102 +
           769442-770159,770710-770805,771340-771363,771470-772542
          Length = 636

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 586 DVYLHNNHCLPVQSTGNKVFGWYQNNLISM*NPSDN*VW 702
           D+ +       V STG  VF WY +N+ S+    +  VW
Sbjct: 203 DISIFTETAKRVISTGETVFTWYTSNVTSICQQCEREVW 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,674
Number of Sequences: 37544
Number of extensions: 296154
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)