Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30487
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02190.1 68417.m00291 DC1 domain-containing protein contains ...    29   3.2  
At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical ...    28   7.4  

>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 659

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 308 WNNLCSRIFNRFLYLYIDEKLLIV 379
           W N+C RI N F Y Y D KL ++
Sbjct: 454 WCNVCGRISNGFSYQYGDMKLDVI 477


>At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical to
           fatty acid elongase 1 [GI:881615]
          Length = 506

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 462 HNIISCIMQNIIAVTNSSRFCYM*LILYTINNFSSIY 352
           HN +S +  N+I VT    F    L+LY +   + +Y
Sbjct: 42  HNFLSYLQHNLITVTLLFAFTVFGLVLYIVTRPNPVY 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,330,239
Number of Sequences: 28952
Number of extensions: 274771
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)