Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30486X
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 160 1e-40
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 160 1e-40
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 160 1e-40
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 79 4e-16
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 28 1.3
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 27 2.3
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 27 3.0
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 4.0
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 4.0
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 5.2
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 26 5.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.1
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 160 bits (389), Expect = 1e-40
Identities = 76/82 (92%), Positives = 81/82 (98%)
Frame = +2
Query: 8 MARAKQTARKSTGGKAPRKQLATKAARESAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 187
MAR KQTARKSTGGKAPRKQLA+KAAR++AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 188 LLIRKLPFQRLVRQIAQDFKTD 253
LLIRKLPFQRLVR+IAQDFKTD
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTD 82
Score = 94.3 bits (224), Expect = 1e-20
Identities = 45/58 (77%), Positives = 50/58 (86%)
Frame = +1
Query: 241 FQN*LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVAIMPKHIQLARRIRGERA 414
F+ LRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRV I PK +QLARR+RGER+
Sbjct: 79 FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 160 bits (389), Expect = 1e-40
Identities = 76/82 (92%), Positives = 81/82 (98%)
Frame = +2
Query: 8 MARAKQTARKSTGGKAPRKQLATKAARESAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 187
MAR KQTARKSTGGKAPRKQLA+KAAR++AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 188 LLIRKLPFQRLVRQIAQDFKTD 253
LLIRKLPFQRLVR+IAQDFKTD
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTD 82
Score = 94.3 bits (224), Expect = 1e-20
Identities = 45/58 (77%), Positives = 50/58 (86%)
Frame = +1
Query: 241 FQN*LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVAIMPKHIQLARRIRGERA 414
F+ LRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRV I PK +QLARR+RGER+
Sbjct: 79 FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 160 bits (389), Expect = 1e-40
Identities = 76/82 (92%), Positives = 81/82 (98%)
Frame = +2
Query: 8 MARAKQTARKSTGGKAPRKQLATKAARESAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 187
MAR KQTARKSTGGKAPRKQLA+KAAR++AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 188 LLIRKLPFQRLVRQIAQDFKTD 253
LLIRKLPFQRLVR+IAQDFKTD
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTD 82
Score = 94.3 bits (224), Expect = 1e-20
Identities = 45/58 (77%), Positives = 50/58 (86%)
Frame = +1
Query: 241 FQN*LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVAIMPKHIQLARRIRGERA 414
F+ LRFQS+AIGALQEA EAYLV LFEDTNLCAIH KRV I PK +QLARR+RGER+
Sbjct: 79 FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 79.4 bits (187), Expect = 4e-16
Identities = 38/51 (74%), Positives = 44/51 (86%)
Frame = +1
Query: 253 LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVAIMPKHIQLARRIRG 405
LR+QS A+ LQEA+EA+LV LFEDTNLCAIHAKRV IM + +QLARRIRG
Sbjct: 69 LRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
Score = 65.3 bits (152), Expect = 7e-12
Identities = 27/39 (69%), Positives = 36/39 (92%)
Frame = +2
Query: 128 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVRQIAQDF 244
RYRPGT ALREIR+YQ+ST+LLI++LPF R+VR+I+ +F
Sbjct: 21 RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEF 59
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 445 CNSVTFLCLTYMKLTLNIIISIHHKE 522
C S+ CL Y+ T+N I+ ++H E
Sbjct: 628 CESMNVRCLIYVSQTINEIVRVNHFE 653
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 89 ESAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVRQIAQDFKTDCVSSL 268
ES G V++ +PG A +I+RY+ L Q Q++ D T
Sbjct: 21 ESRRKDGSVRRERAVKPGYTAPEDIKRYRPGRG-NFASLEKQMKKLQLSNDASTSKSIDR 79
Query: 269 PP-SELSRRQ 295
PP SEL + +
Sbjct: 80 PPISELEKEK 89
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 439 IRCNSVTFLCLTYMKLTLNIIISIHHKE 522
++ + TFL + KL +NI+ S+HH E
Sbjct: 66 LKIDQRTFLTPSSKKLQINIVSSLHHLE 93
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 3 KQWLVLNKQPVNLLEVKLRVNNLLQ 77
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 307 DKPRLPPGELRWRQTGNAISFEILSDLSHKTLERQ 203
D+P LPP L + ++S L++L KT +R+
Sbjct: 13 DEPELPPSVLSLKSKFESLSTGDLTNLDEKTAKRR 47
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 149 ALREIRRYQKSTELLIRKLPFQR 217
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 348 VNSTQVGVFEQANEISLACLLESSDGGRLETQS 250
+N Q+ E A++ SLACL +SDG L T S
Sbjct: 176 INCKQITKIE-AHKDSLACLAFNSDGTMLATAS 207
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 27 QPVNLLEVKLRVNNLLQKRRGN 92
+P N LEVKL NN L+ GN
Sbjct: 965 RPYNGLEVKLNANNNLEIDTGN 986
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,947
Number of Sequences: 5004
Number of extensions: 46990
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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