Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30486X
         (635 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     164   2e-42
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       157   3e-40
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    24   3.5  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  164 bits (399), Expect = 2e-42
 Identities = 79/82 (96%), Positives = 81/82 (98%)
 Frame = +2

Query: 8   MARAKQTARKSTGGKAPRKQLATKAARESAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 187
           MAR KQTARKSTGGKAPRKQLATKAAR+SAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 188 LLIRKLPFQRLVRQIAQDFKTD 253
           LLIRKLPFQRLVR+IAQDFKTD
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTD 82



 Score =  107 bits (256), Expect = 4e-25
 Identities = 53/58 (91%), Positives = 54/58 (93%)
 Frame = +1

Query: 241 FQN*LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVAIMPKHIQLARRIRGERA 414
           F+  LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV IMPK IQLARRIRGERA
Sbjct: 79  FKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  157 bits (381), Expect = 3e-40
 Identities = 75/80 (93%), Positives = 78/80 (97%)
 Frame = +2

Query: 14  RAKQTARKSTGGKAPRKQLATKAARESAPSTGGVKKPHRYRPGTVALREIRRYQKSTELL 193
           R KQTARKSTGGKAPRKQLA KAAR+SAP+TGGVKKPHRYRPGTVALREIRRYQKSTELL
Sbjct: 1   RTKQTARKSTGGKAPRKQLARKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL 60

Query: 194 IRKLPFQRLVRQIAQDFKTD 253
           IRKLPFQRLVR+IAQDFKTD
Sbjct: 61  IRKLPFQRLVREIAQDFKTD 80



 Score = 69.7 bits (163), Expect = 7e-14
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +1

Query: 241 FQN*LRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 357
           F+  LRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 77  FKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 115


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 149 ALREIRRYQKSTELLIRKLPFQRLVRQIAQDFKTDCVSSLPPSELSRRQ 295
           A+R    Y++   L IR+   + L + +A    T    S+P + LS+RQ
Sbjct: 98  AIRHREEYRRDMAL-IREENTKLLAQLMAMKVVTTTAGSIPSASLSQRQ 145


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,729
Number of Sequences: 2352
Number of extensions: 11697
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)