Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30485
(624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 113 2e-26
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 110 1e-25
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.41
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.7
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 27 1.7
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.2
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 26 3.8
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.8
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||... 25 6.7
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 8.9
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.9
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 113 bits (272), Expect = 2e-26
Identities = 54/86 (62%), Positives = 68/86 (79%)
Frame = +1
Query: 244 EEANREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 423
+ A+ EG V+VGTVT+D RL +PK++VAAL T+ ARARIL AGGE+LT DQLALRA
Sbjct: 73 KSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRA 132
Query: 424 PTGKKTVLVQGQRNAREAVRHFGPAP 501
PTG TVL++G+++AREA RHFG P
Sbjct: 133 PTGSNTVLLRGKKHAREAYRHFGFGP 158
Score = 58.4 bits (135), Expect = 8e-10
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MGIDI H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 215 ISVSRLA 235
IS+S++A
Sbjct: 61 ISISKIA 67
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 110 bits (265), Expect = 1e-25
Identities = 52/86 (60%), Positives = 67/86 (77%)
Frame = +1
Query: 244 EEANREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 423
+ A+ + VVVGTVT+D R+ +PK+++AAL T+ ARARIL AGGE+LT DQLALRA
Sbjct: 73 KSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRA 132
Query: 424 PTGKKTVLVQGQRNAREAVRHFGPAP 501
PTG TVLV+G+++AREA RHFG P
Sbjct: 133 PTGSNTVLVRGKKHAREAYRHFGFGP 158
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/67 (37%), Positives = 42/67 (62%)
Frame = +2
Query: 35 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 214
MGIDI H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 215 ISVSRLA 235
IS+S++A
Sbjct: 61 ISISKIA 67
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.41
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 265 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 441
L+ +VV +TNDVRL++I + + H E A L A +++ + T KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752
Query: 442 VLVQGQRNAREAVRHFGPAPG 504
V+G EA + G PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 298 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 411
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 399 SKNFSSSSQNACTSFFGNMKSSHRH 325
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 312 VQSHVICDCPHYHGNQTL--TIGFFMWRAKRDTEIGGRLIRL 193
V H+ C+ ++H +L WR D++I RL+RL
Sbjct: 335 VAKHLCCELKYFHHATSLGSVESLIEWRRMTDSKIDPRLVRL 376
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 483 SLWPCSRSTRSHTKPYVRTK 542
+L+PC+RSTRS T PY TK
Sbjct: 513 NLFPCNRSTRS-TLPYRPTK 531
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 396 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 283
KN+ SS + TS + N+ +S+R +R +QS V + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -1
Query: 513 SACSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNACTSFF 352
S+ W RA + C I L+ + + TK + KN SS++ AC+SFF
Sbjct: 312 SSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLACSSFF 368
>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.4 bits (53), Expect = 6.7
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Frame = +1
Query: 79 HRS*ISRYLLEVTCKALQILGQTYKCQIQSDR--STPALYEPYQPATNLCVSFGAPHEEA 252
HRS I YL + C L +G + I + R + + + T L V F + A
Sbjct: 105 HRSPIHEYLKLIVCSPLYFMGILEETDIVNVRLFESETFAKSFNSITTLSVRFSVKNTPA 164
Query: 253 NREGLIAVVVGTVTNDVRLYKIPKMTVAALH 345
+V + D+ Y+ + LH
Sbjct: 165 Q------AIVKIYSKDIEFYEATLAFASKLH 189
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 403 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 498
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 8.9
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = -1
Query: 438 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTL 259
L+A ST S K S + F K S RYL Q IC+ P + +L
Sbjct: 53 LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112
Query: 258 T 256
+
Sbjct: 113 S 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,533
Number of Sequences: 5004
Number of extensions: 56254
Number of successful extensions: 159
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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