Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30485
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 123 1e-28
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 120 7e-28
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 105 4e-23
07_01_0755 - 5806614-5806939,5807039-5809415 30 1.7
12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356 29 2.3
02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030 29 4.0
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 5.2
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 5.2
12_01_1076 + 11184047-11184270,11186178-11186352,11186554-111866... 28 6.9
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.9
01_06_1297 - 36095727-36095776,36096285-36097467 28 6.9
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 27 9.2
05_07_0198 - 28359092-28359457,28359574-28359729,28359844-283600... 27 9.2
02_05_0718 + 31203358-31203717,31203826-31204011 27 9.2
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 27 9.2
01_06_1749 - 39636951-39638102 27 9.2
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 123 bits (296), Expect = 1e-28
Identities = 61/105 (58%), Positives = 73/105 (69%)
Frame = +1
Query: 238 PHEEANREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 417
P A IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLAL
Sbjct: 76 PDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLAL 135
Query: 418 RAPTGKKTVLVQGQRNAREAVRHFGPAPGARALTLNPMFAPRDMK 552
RAP G+ TVL++G +NAREAV+HFGPAPG P + K
Sbjct: 136 RAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 212 PISVSRLARHMK 247
P+S+ RL R M+
Sbjct: 61 PLSMRRLVRFME 72
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 492 PCSRSTRSHTKPYVRTKGH--EKARPSRRA 575
P S+TKPYVR+KG EKAR R +
Sbjct: 161 PAPGVPHSNTKPYVRSKGRKFEKARGRRNS 190
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 120 bits (290), Expect = 7e-28
Identities = 59/86 (68%), Positives = 68/86 (79%)
Frame = +1
Query: 247 EANREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAP 426
E E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP
Sbjct: 72 EGKEENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAP 131
Query: 427 TGKKTVLVQGQRNAREAVRHFGPAPG 504
G+ TVL++G +NAREAVRHFG APG
Sbjct: 132 LGENTVLLRGPKNAREAVRHFGKAPG 157
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 212 PISVSRLARHMK 247
P+S+ RLA+ M+
Sbjct: 61 PLSLRRLAKFME 72
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +3
Query: 513 SHTKPYVRTKGH--EKARPSRRA 575
SHTKPYVR+KG EKAR R +
Sbjct: 161 SHTKPYVRSKGRKFEKARGRRNS 183
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 105 bits (251), Expect = 4e-23
Identities = 59/116 (50%), Positives = 72/116 (62%), Gaps = 17/116 (14%)
Frame = +1
Query: 256 REGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGK 435
+E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+
Sbjct: 74 KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQ 133
Query: 436 KT-----------------VLVQGQRNAREAVRHFGPAPGARALTLNPMFAPRDMK 552
T VL++G +NAREAV+HFGPAPG P + K
Sbjct: 134 NTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189
Score = 57.6 bits (133), Expect = 7e-09
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 35 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 211
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 212 PISVSRLARHMK 247
P+S+ RL R M+
Sbjct: 61 PLSLRRLVRFME 72
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 492 PCSRSTRSHTKPYVRTKGH--EKARPSRRA 575
P S+TKPYVR+KG EKAR R +
Sbjct: 170 PAPGVPHSNTKPYVRSKGRKFEKARGRRNS 199
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 366 CTSFFGNMKS-SHRHLRYLVQSHVICDCPHYHGNQTLTIGFFMWRAKRDTEIGGRL 202
C +G+ HR + Y V V+ C +L + FMWR +++ E ++
Sbjct: 525 CGPIYGSSYGMDHRKISYRVALAVVGSCVLIFSVVSLVVALFMWRERQEKEAEAKM 580
>12_02_0472 - 19469512-19469541,19469755-19469785,19469975-19471356
Length = 480
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -2
Query: 386 PPAAKMRARAFSVT*RAATVIFGILYSLTSFVTVPTTTAIKPSRLASSCGA 234
P + RAR+ S+T A +V F + T TTTA K R SS A
Sbjct: 293 PRPSHRRARSMSITGSAKSVRFPFTRQASRSTTTTTTTAFKVIRSRSSRAA 343
>02_05_0431 + 28933418-28933951,28934066-28934213,28934729-28935030
Length = 327
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 325 MTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT-VLVQGQRNAREAVRHFGPAP 501
+ +A E AR ILA L + A+RA TG+ V R+A R A
Sbjct: 50 LAMATAAAREGARVSILARNAARLEEARGAIRAATGRDVGVHAADVRDADAVARALAEAG 109
Query: 502 GARALTLN-PMFAPRDMKKQ 558
L N +F P++++KQ
Sbjct: 110 PVDVLVCNHGVFVPQELEKQ 129
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 381 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 283
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -2
Query: 533 NIGFSVRARAPGAGPK*RTASRAFR*PCTSTVFLPVGARRAS*SKVRISPPAAKMRA 363
N G S A A AG + R + R P T + P G+R A+ S RIS P + A
Sbjct: 57 NAGRSSAAAAEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSS-RISAPTSPSSA 112
>12_01_1076 +
11184047-11184270,11186178-11186352,11186554-11186637,
11186712-11186953,11187029-11187266,11187814-11187893,
11187968-11188052,11188148-11188279,11188358-11188471,
11189550-11189594,11189840-11189924,11190043-11190102,
11190178-11190317
Length = 567
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -3
Query: 367 VHELFR*HEEQPPSSSVSCTVSRHL*LSPLPR--QSNPHDWLLHVARQTRHR 218
+HE F EE+P SSS++ T S+ L LP + +PH + Q+RHR
Sbjct: 520 LHE-FADTEEEPQSSSLNSTPSQ---LDQLPESLEPSPHSSISSEDSQSRHR 567
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 395 LLLISWLFVLRLARRQYWYKVSEML 469
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>01_06_1297 - 36095727-36095776,36096285-36097467
Length = 410
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +1
Query: 364 ARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGARALTLNPMFA 537
AR+ A+G + T Q RAP+ V + N+ VR P PG+ A L + A
Sbjct: 112 ARLPASGKLVTTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSATVLGAVTA 169
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/95 (23%), Positives = 40/95 (42%)
Frame = +1
Query: 253 NREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTG 432
+R A++ D Y ++ + +L R+L A ++ A+R G
Sbjct: 54 HRHAYAAMMYMGTPRDYEFYVAVRVMMRSLARIGADADRVLIASADVPADWVRAMREEDG 113
Query: 433 KKTVLVQGQRNAREAVRHFGPAPGARALTLNPMFA 537
+ VLV+ +N E+ + G LTLN ++A
Sbjct: 114 MRVVLVENMKNPYES--NLGGINRRFKLTLNKLYA 146
>05_07_0198 -
28359092-28359457,28359574-28359729,28359844-28360011,
28360082-28360206,28360288-28360405,28360491-28360718,
28360959-28361099,28361433-28361498,28361770-28361862,
28361965-28362225
Length = 573
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 512 ARAPGAGPK*RTASRAFR*PCTSTVFLPVGARRAS*SKVRISPPA 378
A A A PK TA A P + P+ ARR + + + +PPA
Sbjct: 16 AAAAAAAPKAPTAPAAVSFPVSHAACAPLAARRRAVTAMVAAPPA 60
>02_05_0718 + 31203358-31203717,31203826-31204011
Length = 181
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 246 RSQS*GFDCRGSGDSHK*RETVQDTEDDGGCSSCYRK 356
R + G D GSGD K R D +DDG Y+K
Sbjct: 117 RKKHGGDDDDGSGDERKPRYKKHDDDDDGERKPRYKK 153
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 277 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 417
++G++ DV I + VAA+ V + R + GG +L Q+A+
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAM 373
>01_06_1749 - 39636951-39638102
Length = 383
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 524 FSVRARAPGAGPK*RTASRAFR*PCTSTVFLPVGAR 417
+ RA+A AGP P STVF+PVG R
Sbjct: 98 YDARAQAVSAGPAWPPGEGDSTLPSCSTVFVPVGDR 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,057,432
Number of Sequences: 37544
Number of extensions: 401946
Number of successful extensions: 1066
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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